Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 262 5e-65
seq7084 253 3e-62
>seq7155
Length=3116674
Score = 262 bits (290), Expect = 5e-65
Identities = 489/712 (69%), Gaps = 7/712 (1%)
Strand=Plus/Plus
Query 33129 AATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT 33188
|| ||| | ||| || || ||||| ||||| ||| | || |||||||| || ||
Sbjct 2758585 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 2758644
Query 33189 AAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTAT 33248
| || || || | ||| |||| | ||||| || ||||| || || || | ||
Sbjct 2758645 TAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 2758704
Query 33249 AATAG-ATCTA-ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACAT 33306
|| | | | ||| | | | ||| ||| || | |||||||| ||||||||||||
Sbjct 2758705 TATTTCAACAATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 2758762
Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366
||||| || || || || ||||| |||| ||||||||| |||||||| || | ||
Sbjct 2758763 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 2758822
Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426
||||||| ||||| || |||||||| || || ||||| || ||| ||||||||
Sbjct 2758823 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATA 2758882
Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGTCATGTA-TC 33483
||||| || |||||||| ||||| | | || ||| | ||| || | | | ||
Sbjct 2758883 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATC 2758942
Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543
|| | |||||||| ||||| ||||| |||||| || ||||| ||||| ||
Sbjct 2758943 CAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAAT 2759002
Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603
| || || ||| || || |||| ||| ||||| || || | |||||||||||
Sbjct 2759003 AAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCA 2759062
Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663
||||| | || || || || || |||||||| ||||| || | ||||| || | ||
Sbjct 2759063 GAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGG 2759122
Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723
||||| || || ||||| | | |||||||||||| || || ||| || || |||
Sbjct 2759123 ACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAA 2759182
Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 33783
|| || || || ||| ||||||| | ||| | || || ||||||||
Sbjct 2759183 AAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCC 2759242
Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
||||||||||| | ||||||||| || |||||||| || ||||| |||||||
Sbjct 2759243 ATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 2759294
>seq7084
Length=1258986
Score = 253 bits (280), Expect = 3e-62
Identities = 603/894 (67%), Gaps = 22/894 (2%)
Strand=Plus/Plus
Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991
||| ||||| | || || || || | |||||||||||| || || || | ||| ||||
Sbjct 2260 CCGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTT 2319
Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051
||||||||||| ||||| ||||| ||||| | ||| |||| || || || || | |
Sbjct 2320 GATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTT 2379
Query 63052 GAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAG-ATTTGTATCTCCT 63109
| ||||| ||||| ||| | | |||| | || |||||| | ||| | | ||||
Sbjct 2380 GCGATTCAATAAT-GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCT 2438
Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
| || || | ||| ||| || ||||||||| || ||||| || | | || ||
Sbjct 2439 TCCTGTT-CATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACC 2497
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC--CTTC-ACTCGTTTCAT 63226
||||| | | |||||||| | |||||| ||| ||||| |||| || ||||||||
Sbjct 2498 GGGACACTTGTGTGGACACATTAGCGACCAGTCT---TCATCGGCTTCTACACGTTTCAT 2554
Query 63227 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTC 63285
||| |||||||| ||||| | || ||| || | |||||||| | ||| || || || |
Sbjct 2555 AAATAGATCAGGTATCCACA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTAC 2613
Query 63286 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345
| || || || || | ||| | || | | |||||||| |||||| ||||| | ||| |
Sbjct 2614 CAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGA 2673
Query 63346 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405
|||| | | || |||||||| | || ||||| | || | || | |||||
Sbjct 2674 TGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGA 2733
Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465
| |||| |||||| || | | ||| |||||| | | ||| ||||| | || | |
Sbjct 2734 ACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGC 2793
Query 63466 CACTGGCACGAAT---AT-TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63521
| | || || || || ||| || ||||| || || || || ||| || ||
Sbjct 2794 CTTTTGCGCGTATGCAATGTAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAATC 2849
Query 63522 AATGCGCATCG-TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580
||||| ||| | | | | ||| | | ||||| || ||| ||| || | |||| | ||
Sbjct 2850 AATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAG 2908
Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640
|||||| || |||| ||| | | |||| | ||| || | || ||||||||
Sbjct 2909 TAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGC 2968
Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63700
|| ||||| | ||| ||||| | ||||| || || || |||| || || ||
Sbjct 2969 ATGTGTAAAATAACGTTCGGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTC 3028
Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760
||| || || | || |||||||||||||| ||||| |||| ||||| || |||
Sbjct 3029 GCCATGTATACCGATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCC 3088
Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814
|| | || | ||| ||||| ||| | ||||||||||||||||| || ||
Sbjct 3089 ATTCAACTTTAGCAAATAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
Score = 205 bits (226), Expect = 1e-47
Identities = 443/656 (68%), Gaps = 15/656 (2%)
Strand=Plus/Plus
Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075
|| ||||||||||| | ||| ||||| ||||| || ||||| |||| ||||| |||
Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630
Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135
|| ||| || || ||| ||| | || || || | || || || | || |||||
Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690
Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195
||||||||||| || || | |||||||||||||| || || || | ||| |||
Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750
Query 62196 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATGGA 62251
|||| |||||| || | |||| || | | | ||| | || || ||| || |||||
Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATGTTGTATGGA 1809
Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311
|| | | | ||||| |||| || || ||||||| ||| || ||||||||
Sbjct 1810 GCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAG 1869
Query 62312 AACTC-TAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 62370
| | | ||| || || |||| || ||||||||||| || || | || | || || |
Sbjct 1870 ATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTAT 1928
Query 62371 AAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 62430
|||||||| || |||||||| | |||||||| || |||| ||||||||||||||| |
Sbjct 1929 AAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAG 1988
Query 62431 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTT--CTGATTTTATC 62488
|||| ||||| || || | || ||| || | | ||| ||||| | ||||| ||
Sbjct 1989 CAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACC--ATGTTGCTTTATTTTCTC 2046
Query 62489 TTTTA--GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 62546
|| | ||| ||||||||||||||| | ||| |||
Sbjct 2047 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 2104
Query 62547 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 62606
| |||||| ||||| || || ||| ||| || || || | || | || ||||||
Sbjct 2105 AAAATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCT 2164
Query 62607 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662
| ||| ||||| || || ||||| || || ||||| |||||||| || | || |||
Sbjct 2165 AATTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622891399504560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |