Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7104 159 2e-34 seq7156 122 6e-23 >seq7104 Length=1453772 Score = 159 bits (176), Expect = 2e-34 Identities = 165/214 (77%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || || ||||||||||| | ||| |||||||| || |||||||| Sbjct 1088479 ATGGGTTCCGTTAATGTGAATCGTAATGTCACCGACATTTTCTACCGTTATAAAATGCCA 1088420 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||| | || ||||||||||| || || ||||| || |||||||| ||||| || ||| Sbjct 1088419 CGCTTGCAAGCTAAGGTCGAGGGCAAAGGTAACGGCATCAAAACCGTTATTGTTAATATG 1088360 Query 6282 CCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 ||||||| || | |||| ||||||| || |||||||||||||| || ||||| || | Sbjct 1088359 GCTGAAGTGGC--ACGCGCCATCGGACGTCCGGCCACCTACCCGACCAAGTATTTTGGCT 1088302 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| | |||||||| || || ||||| |||| Sbjct 1088301 GCGAATTGGGCGCTCAAACACAATTTGACTACAA 1088268 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||||| || |||||| || || |||||||| ||| Sbjct 422163 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 422104 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | |||||| |||||||| |||| ||||||||||| | |||| Sbjct 422103 AGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 422044 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||| ||| || || ||||| | | |||||| |||||| Sbjct 422043 ATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 421984 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || |||||||| |||||||| || ||||| || Sbjct 421983 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | || ||||| |||||| ||||| |||||||| || || | Sbjct 422393 TACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGG 422334 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || || ||||| || || || || | ||||||||||| | || Sbjct 422333 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGG 422274 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || |||||| || ||||||| | ||||| | |||| Sbjct 422273 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAA 422214 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || || || || ||||| |||||||| ||||| ||||| ||||||||| Sbjct 422213 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 422164 >seq7156 Length=3407544 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||| |||||||| || || ||||||||| || ||||| || | Sbjct 1526506 TACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG 1526565 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || | || || |||||||||||||| || || | || |||||||| | || Sbjct 1526566 ACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGG 1526625 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| ||||| || ||||| | || || || | || | Sbjct 1526626 GGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 1526685 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | ||||| || || || ||||| || |||||||| ||||| |||||||| || Sbjct 1526686 CCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334917947176946