Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 125 6e-24
>seq7104
Length=1453772
Score = 125 bits (138), Expect = 6e-24
Identities = 159/216 (74%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || |||||||| || ||| ||||||| | || || ||| | ||
Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || ||| | || |||| |||| ||| || || ||||| || || || ||
Sbjct 422225 GATACAATTGAG--AATGTCAAAGCTAAAATTCAA-GATAAGGAAGGAATCCCCCCAGAT 422281
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | ||||| || |||||||| || || |||| ||||| || ||| ||
Sbjct 422282 CAACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTAT 422341
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||||||| || |||||||| ||||||||||| |||
Sbjct 422342 AATATTCAGAAGGAATCCACTCTACATTTAGTTCTA 422377
Score = 111 bits (122), Expect = 1e-19
Identities = 156/216 (72%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| ||||| || || ||||||| | || || || | ||
Sbjct 421936 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 421995
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || | || |||| || | ||| ||||||||||| || || || ||
Sbjct 421996 CGATACTATTGAA--AATGTTAAAGCTAAGATTCAA-GACAAAGAAGGAATCCCCCCAGA 422052
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | || |||||||| |||||| | ||||| | |||||| || ||||||
Sbjct 422053 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTA 422112
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || || || || || ||||| || ||
Sbjct 422113 CAACATCCAGAAGGAGTCTACACTTCATTTGGTTCT 422148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433290155028290
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |