Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7155 298 6e-76 seq7113 131 2e-25 seq7145 82.4 9e-11 >seq7155 Length=3116674 Score = 298 bits (330), Expect = 6e-76 Identities = 488/701 (70%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 |||||| |||||||| || || | ||||| | | |||||||| || | | | || Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 || | |||||| || ||||| || | ||| ||| ||| ||||| | ||||| | Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 93046 --TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||| || ||| ||||||||||| | || | | |||| || || || ||||| Sbjct 2758714 AATACGCTC--ATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCA 2758771 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||| | || || |||||||| || | |||||| ||||| || ||||| | | Sbjct 2758772 CAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAA 2758831 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || |||||||| ||||| || || ||||||||||| ||| || || |||||||| ||| Sbjct 2758832 CCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAACG 2758891 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283 || |||||||| | | |||||| |||| || || || || | ||||| | Sbjct 2758892 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAGC 2758951 Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343 |||||||| || || ||| | ||| | ||| || ||||| || |||| ||||| Sbjct 2758952 GCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATTC 2759011 Query 93344 CGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACA 93403 | | | ||| || || |||||||| ||||| | ||||||||||||||| ||| Sbjct 2759012 CTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCACA 2759071 Query 93404 TTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463 |||||||| |||||||| ||||| ||||| || | || || || | || ||||| || Sbjct 2759072 TTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTGG 2759131 Query 93464 GAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAAT 93523 | || | || || | ||||||||| || |||||||| ||||| || ||||| || || Sbjct 2759132 CAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTAAC 2759191 Query 93524 ATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTT 93583 | || ||||||||| |||| ||| | || ||||||| | |||||| Sbjct 2759192 ACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTTA 2759251 Query 93584 GAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 |||||||| ||||| || || ||||| |||||||||||||| Sbjct 2759252 GAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 2759292 >seq7113 Length=1888589 Score = 131 bits (144), Expect = 2e-25 Identities = 84/91 (92%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 479455 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 479396 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||||||| Sbjct 479395 AGCGTGGGTTCGAACCCCACACCTGACAAAT 479365 Score = 129 bits (142), Expect = 7e-25 Identities = 85/93 (91%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 480489 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 480430 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||||||||||||||||||||||||| || Sbjct 480429 AGCGTGGGTTCGAACCCCACACCTGACAAACTA 480397 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 503615 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 503674 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 503675 GTGGGTTCGAACCCCACACCTGACAAA 503701 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 503801 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 503860 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 503861 GTGGGTTCGAACCCCACACCTGACA 503885 >seq7145 Length=2590196 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/110 (78%), Gaps = 6/110 (5%) Strand=Plus/Minus Query 162733 TATaaaaaaaTCAGAA----TTACCTCTTGTGAGAATCGAACTCACGACAACCGGCGTAT 162788 |||||||| || |||| || |||| |||||| || ||||||||||| | || || Sbjct 203213 TATAAAAATATTAGAAATTGTTGCCTCCTGTGAGGATTGAACTCACGACCCCTGGTTTAC 203154 Query 162789 AAGACCGATGCTCTAACCACTGAGCTAAAGAGGCTAC-ATTAAAACTCTG 162837 |||||| |||||| |||||||||||||||||| || ||| ||| |||| Sbjct 203153 AAGACCAGTGCTCT-GCCACTGAGCTAAAGAGGCGACAATTTAAATTCTG 203105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556810919193840