Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq7084 170 2e-37 seq7104 159 3e-34 seq3141 116 3e-21 >seq7084 Length=1258986 Score = 170 bits (188), Expect = 2e-37 Identities = 458/691 (66%), Gaps = 16/691 (2%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 || ||||| ||||||| ||||| | || || || || || |||||||| |||||||| Sbjct 1541 TTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCC 1600 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 || || | ||| ||||| || | || || | || | | | ||| |||| Sbjct 1601 GTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTAAGCTTGCCATAGTTGGGC 1660 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | || || || || || ||||| ||||| || || | |||||||| |||||| Sbjct 1661 TCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTGCAGCC 1720 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || |||| | ||||||| || ||||| || |||||||| || || | | ||| Sbjct 1721 ATTTTAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 1780 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 | |||||| |||||| | || | | |||| | | ||||| || ||| ||| Sbjct 1781 TGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTTTCATA 1840 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || | ||||| || | | | | |||| ||||| | |||| |||||| Sbjct 1841 TCATCATCCCACAAACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTACAACTTGA 1900 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || ||||||| | || || || ||||| || ||| |||| ||||| || ||| Sbjct 1901 AATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATGACTCA 1960 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGT 129256 |||||||| | |||||||| |||| || || |||||| || | ||||| |||| Sbjct 1961 TTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAA--GAGT 2018 Query 129257 TTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GT 129314 | || | ||| || || || || | | || |||| ||||| | ||| | ||| || Sbjct 2019 TGCGGATACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAA--GATCAGT 2076 Query 129315 GGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGA--AAAG 129372 ||||| | || ||||| ||| || || || |||||| ||| |||| || | Sbjct 2077 TGGTGTTTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGG--TGAACCTTTA 2134 Query 129373 TAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAA 129432 || | || | ||| || || || ||||||||||| ||||||||||||||| | Sbjct 2135 TACGTTTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCCATAG 2194 Query 129433 TAAATTGTTTCGGCAAT-TTTGGTG-TTCAA 129461 ||||| |||||| ||| |||| || ||||| Sbjct 2195 TAAATAGTTTCG--AATATTTGCTGATTCAA 2223 Score = 152 bits (168), Expect = 4e-32 Identities = 405/608 (67%), Gaps = 33/608 (5%) Strand=Plus/Plus Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 || || |||||||||| || ||||||||| ||||| ||||| | || || ||||||| Sbjct 2265 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTA 2324 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTT 129858 || || || ||||||||||| |||| |||||| || ||||| || || ||||||| | Sbjct 2325 CTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGAT 2384 Query 129859 TCGACAATGGTCCTGAAC--AAGTCTC-GAGCCTTGATCTGTCTTACAAATTTGCCACAT 129915 || | |||| || ||| ||| || | || || || | ||||| ||| ||| | Sbjct 2385 TCAATAATG---CTAAACCAAAGACTTTGTGCTTTTATTT-TCTTA-----TTGGCACGT 2435 Query 129916 --TTC----TCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGC 129969 ||| || ||| || ||| | | ||| || ||| || ||| | | Sbjct 2436 CCTTCCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTA-- 2493 Query 129970 AACGGCGATTCAC----GCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTT 130025 ||| | || ||| | |||||||| | ||| | |||| ||||| || ||||| Sbjct 2494 AACCGGGA--CACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTT 2551 Query 130026 CATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTCTATCCTCG 130083 |||||| | ||| |||| ||||| ||| || |||||||||| || | | | || || Sbjct 2552 CATAAATAGATCAGGTATCCACAAGGCATAGAACAAATCTCTGGCACGATGC--TCTTCT 2609 Query 130084 GCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACA 130143 ||| |||| |||| || | || ||| |||| || || ||||| ||||| | Sbjct 2610 TTACCAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGG 2669 Query 130144 TAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTG 130200 || || || | ||||| |||||| || |||||| || || | ||| | ||| Sbjct 2670 TAGATGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTA 2729 Query 130201 TTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAA 130260 ||| | ||||||||||| | | |||| || || | ||| ||||| | | |||| | Sbjct 2730 TTGAACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCA 2789 Query 130261 CTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATC 130320 |||| || || | | ||| ||| | ||||| || ||||| || |||| || ||| Sbjct 2790 GTGCCTTTTGCGCGTATGCAATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATC 2849 Query 130321 AACGCGCA 130328 || || || Sbjct 2850 AATGCACA 2857 >seq7104 Length=1453772 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || || ||||| ||||| | || || || | || Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| ||||| || || || || |||||| Sbjct 422225 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 422284 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||||||||| |||||| ||||| | ||||| || || Sbjct 422285 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 422344 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| ||||||||||| | || || || || ||| Sbjct 422345 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGT 422392 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || || || || || || || || ||||||| || || ||| | Sbjct 421934 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 421993 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 ||||||| | || || | ||| || ||||||||||| || || || || || ||| Sbjct 421994 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 422053 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || |||||||| ||||| | || || ||||| | ||||||||| Sbjct 422054 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 422113 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || || || || || | ||||| ||| Sbjct 422114 AACATCCAGAAGGAGTCTACACTTCATTTGGTT 422146 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||||||||| || |||||||| | || || || || ||| | || Sbjct 422393 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACGCTGGAGGTTGAACCTTCC 422452 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||||| | || | | ||| ||||||||| ||||||||||||||||| || Sbjct 422453 GATACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCCTCC 422505 >seq3141 Length=2848 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || ||||| || |||||||||| || || | | Sbjct 1344 ATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCG 1403 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||| ||||| || ||||| || |||||| Sbjct 1404 GATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCAA 1463 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || || || || ||| ||||| | | || || || Sbjct 1464 CAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAAT 1523 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||| || || | |||||||| Sbjct 1524 ATTCAGAAAGAGTCTACATTGCATTTAGT 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419691342792790