Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7104 145 2e-29 seq7156 132 1e-25 seq3141 127 5e-24 seq7159 95.1 3e-14 >seq7104 Length=1453772 Score = 145 bits (160), Expect = 2e-29 Identities = 177/239 (74%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || | ||||| || || || ||||| || || | Sbjct 422167 CATG-CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAAT 422109 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || |||||||||||||| | |||||| || || ||||| | ||| |||||| | Sbjct 422108 CGGACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGA---T 422052 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||||||||| || || || || ||||| || ||||| |||| |||| | Sbjct 422051 CTGGGGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATG 421992 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||| || || || ||||| ||||| || |||| ||||| ||||| || |||||| || Sbjct 421991 GTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 421933 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 422356 TTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAA 422297 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| |||||| |||||| |||||||| ||||| || ||||| ||||| || Sbjct 422296 AATCAAACGTTGTTGA---TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGAC 422240 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || | |||| | || || || | ||||| || || || |||| ||| || Sbjct 422239 ATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTT 422180 Query 288459 GACGAATATCTGCAT 288473 |||||| |||||||| Sbjct 422179 GACGAAAATCTGCAT 422165 >seq7156 Length=3407544 Score = 132 bits (146), Expect = 1e-25 Identities = 149/198 (75%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | ||||| || ||||| ||||||||||| |||||| Sbjct 1526544 TCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAG 1526603 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||||||| |||| ||||| || ||||| || |||||||| ||||| || Sbjct 1526604 ATCAAACGCTGTTG---ATCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACA 1526660 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || | || || || | ||||| ||||| || || | || ||| Sbjct 1526661 TTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTG 1526720 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 1526721 ACGAAAATCTGCATTTTG 1526738 >seq3141 Length=2848 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | |||||| | ||| | || ||||| || ||||||||||| || Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| ||||| ||||| ||||| || |||||||||||| | || Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||| || ||||| | || || | ||| |||| ||| | || || Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1391 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| ||||| || || || || || ||||| || |||||| Sbjct 1390 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343 >seq7159 Length=3702663 Score = 95.1 bits (104), Expect = 3e-14 Identities = 215/319 (67%), Gaps = 16/319 (5%) Strand=Plus/Plus Query 72507 GCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTA 72566 || ||| |||||| | |||||| || || || ||||| | ||||| ||||||| | Sbjct 2262822 GCCAAGATGTACGGCTTTTGGATAGTTATTAACTATCGTGAAGCATATAATATGTATGCA 2262881 Query 72567 TGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGGCCATCAGTTCGTGACTC 72624 || || || | ||||||||||| |||| || | || | | |||||||| | Sbjct 2262882 TGTAATGGCATATTGTTCAATCACGAA--TCCCCACGTCGTGGTGAAAATTTCGTGACAC 2262939 Query 72625 GTAAAATCACGAAGGTGGTCGCGAATAT-TTTCAATGGTGTCGAAAAATGCA-TGTATC- 72681 | ||||| ||| ||| ||||| || ||||| || | || || | | | || Sbjct 2262940 GCAAAATAACGCGTTCGGTAGCGAAAATATTTCA------TCAACAATTGGAATCTTTCG 2262993 Query 72682 ---TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAA 72738 | |||||| | || | ||| | |||||||| | || | ||||||||| || || | Sbjct 2262994 AATTGGGTAATCTCGACTCGAAACGTGATTGGGGTCACGCAATGGATTACGTGGAGGCCA 2263053 Query 72739 TGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAA 72798 ||||| ||||| ||||| || | || | ||| | ||||||||| || || |||| Sbjct 2263054 TGTGGATGATGTTGCAATTGGAAAAACCTGCTGATTTTGTGATTGCCACCGGTGAAACGC 2263113 Query 72799 CGAGCGTTCGTGAGTTCGT 72817 ||||||||||| || || Sbjct 2263114 ACAGCGTTCGTGAATTTGT 2263132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179546090768548