Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 145 2e-29
seq7156 132 1e-25
seq3141 127 5e-24
seq7159 95.1 3e-14
>seq7104
Length=1453772
Score = 145 bits (160), Expect = 2e-29
Identities = 177/239 (74%), Gaps = 7/239 (3%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | ||| || | ||||| || || || ||||| || || |
Sbjct 422167 CATG-CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAAT 422109
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || |||||||||||||| | |||||| || || ||||| | ||| |||||| |
Sbjct 422108 CGGACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGA---T 422052
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
||||| ||||||||||| || || || || ||||| || ||||| |||| |||| |
Sbjct 422051 CTGGGGGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATG 421992
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||| || || || ||||| ||||| || |||| ||||| ||||| || |||||| ||
Sbjct 421991 GTTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 421933
Score = 132 bits (146), Expect = 1e-25
Identities = 147/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || ||||||||||||| || |||||||| || || || ||||| || |||||
Sbjct 422356 TTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAA 422297
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
|||| ||| |||||| |||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 422296 AATCAAACGTTGTTGA---TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGAC 422240
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || | |||| | || || || | ||||| || || || |||| ||| ||
Sbjct 422239 ATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTT 422180
Query 288459 GACGAATATCTGCAT 288473
|||||| ||||||||
Sbjct 422179 GACGAAAATCTGCAT 422165
>seq7156
Length=3407544
Score = 132 bits (146), Expect = 1e-25
Identities = 149/198 (75%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| |||||||| || ||||||| | ||||| || ||||| ||||||||||| ||||||
Sbjct 1526544 TCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAG 1526603
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| ||||||||| |||| ||||| || ||||| || |||||||| ||||| ||
Sbjct 1526604 ATCAAACGCTGTTG---ATCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACA 1526660
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || | || || || | ||||| ||||| || || | || |||
Sbjct 1526661 TTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTG 1526720
Query 288460 ACGAATATCTGCATTATG 288477
||||| ||||||||| ||
Sbjct 1526721 ACGAAAATCTGCATTTTG 1526738
>seq3141
Length=2848
Score = 127 bits (140), Expect = 5e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | || | |||||| | ||| | || ||||| || ||||||||||| ||
Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| ||||| ||||| ||||| || |||||||||||| | ||
Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||| || ||||| | || || | ||| |||| ||| | || ||
Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1391
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || ||||| ||||| || || || || || ||||| || ||||||
Sbjct 1390 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343
>seq7159
Length=3702663
Score = 95.1 bits (104), Expect = 3e-14
Identities = 215/319 (67%), Gaps = 16/319 (5%)
Strand=Plus/Plus
Query 72507 GCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGTA 72566
|| ||| |||||| | |||||| || || || ||||| | ||||| ||||||| |
Sbjct 2262822 GCCAAGATGTACGGCTTTTGGATAGTTATTAACTATCGTGAAGCATATAATATGTATGCA 2262881
Query 72567 TGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACA--GAGGCCATCAGTTCGTGACTC 72624
|| || || | ||||||||||| |||| || | || | | |||||||| |
Sbjct 2262882 TGTAATGGCATATTGTTCAATCACGAA--TCCCCACGTCGTGGTGAAAATTTCGTGACAC 2262939
Query 72625 GTAAAATCACGAAGGTGGTCGCGAATAT-TTTCAATGGTGTCGAAAAATGCA-TGTATC- 72681
| ||||| ||| ||| ||||| || ||||| || | || || | | | ||
Sbjct 2262940 GCAAAATAACGCGTTCGGTAGCGAAAATATTTCA------TCAACAATTGGAATCTTTCG 2262993
Query 72682 ---TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAA 72738
| |||||| | || | ||| | |||||||| | || | ||||||||| || || |
Sbjct 2262994 AATTGGGTAATCTCGACTCGAAACGTGATTGGGGTCACGCAATGGATTACGTGGAGGCCA 2263053
Query 72739 TGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAA 72798
||||| ||||| ||||| || | || | ||| | ||||||||| || || ||||
Sbjct 2263054 TGTGGATGATGTTGCAATTGGAAAAACCTGCTGATTTTGTGATTGCCACCGGTGAAACGC 2263113
Query 72799 CGAGCGTTCGTGAGTTCGT 72817
||||||||||| || ||
Sbjct 2263114 ACAGCGTTCGTGAATTTGT 2263132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179546090768548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |