Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7084 127 2e-24 seq3141 116 4e-21 seq7104 109 5e-19 seq7099 86.0 6e-12 >seq7084 Length=1258986 Score = 127 bits (140), Expect = 2e-24 Identities = 323/486 (66%), Gaps = 13/486 (3%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATT- 154684 |||| ||||||||| | || |||||||| || ||| ||||| | || | ||||| Sbjct 2265 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTA 2324 Query 154685 CGATTT-GATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 | ||| ||| | || || ||||| ||||| ||||| || ||||| || |||||||| | Sbjct 2325 CTCTTTCGAT--TACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCG 2382 Query 154744 TTTCAATAATTGTGCGAAAC---AGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTT 154800 ||||||||| || |||| |||||| | || | | || | | || || Sbjct 2383 ATTCAATAAT---GCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTT 2439 Query 154801 CGCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGG 154860 | ||||||| || | ||||| |||||| || | || || ||||||| Sbjct 2440 CCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGG 2499 Query 154861 GACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACA 154920 |||| || |||||||| | ||||| ||| | || ||| ||||||||||| | Sbjct 2500 GACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATA 2559 Query 154921 AATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGT 154980 ||| || | |||||| || || |||||||| | || | ||||| || ||| Sbjct 2560 GATCAGGTATCCACAAGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGT 2619 Query 154981 TTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCA 155040 || ||| |||| |||||| || | || || || ||||| || || | || | ||| | Sbjct 2620 TTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAA 2679 Query 155041 TCGCGCCTTTGCGTTTTCC---TCCTTGATCCACGTGACGCACACAATTATTGTACACGC 155097 ||||| ||||| || ||||||||||| | || | ||||||| |||| | Sbjct 2680 AGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTC 2739 Query 155098 GCAACA 155103 |||||| Sbjct 2740 GCAACA 2745 Score = 122 bits (134), Expect = 9e-23 Identities = 449/692 (65%), Gaps = 20/692 (3%) Strand=Plus/Plus Query 153664 TGCTGCATTTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAAT 153723 ||| || ||| ||||| |||||| || |||| || || ||||| || |||||||||| Sbjct 1533 TGCGGCTTTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAAT 1592 Query 153724 ACATGCCGGTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGA 153783 ||||||| || || | ||| ||||| || | || | ||| || || | Sbjct 1593 ACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGT-AAGCTTGCCA 1651 Query 153784 AACT-GGGCTGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGA 153842 | | ||||| || | | ||| |||||||| |||||||||||||| || |||||| Sbjct 1652 TAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGA 1711 Query 153843 TCGGCCGCCATGTCAATCAAGTTTTTACTGCTCATTTCCCACACAGTTTTG--TAGACGG 153900 || || ||||| | |||| || |||| | || ||||| ||||||||| |||| | Sbjct 1712 TCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCG 1771 Query 153901 CTTTAATGTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGG 153960 | | |||| | |||||| ||||| | || | ||| | | |||||| Sbjct 1772 CGT--ATGTGCTGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATAT 1829 Query 153961 AATTGCGCATGTGGTCGTCGTACAAA-TTTAGTCGACATAAATCTTCAACCAAGTGCTGG 154019 ||| ||| | || || ||||| | ||| || ||| | |||||| || Sbjct 1830 TATTTTTCATATCATCATCCCACAAACCCAACTCG-GTTAGATCGCGTAACAAGTGATGA 1888 Query 154020 TTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGC 154079 || | |||||||| || || | | || || || ||| | ||| ||| |||| Sbjct 1889 TTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGT 1948 Query 154080 TCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACC 154139 || || || || |||||||| | |||||||| || | || || ||||| ||| | | Sbjct 1949 TCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGC 2008 Query 154140 AACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCAC 154199 | ||||||||| || | ||| |||| || | || || || | ||||||||| Sbjct 2009 AGCAAAGAGTTGCGGATACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAA 2068 Query 154200 A----AGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGG 154255 | ||||||| ||| | | ||||||||| || || |||| |||| ||| | || Sbjct 2069 AGATCAGTTGGT--GTTTTA--TCCCACATGTCATACTGTAAAATACCCTTACTAACGGG 2124 Query 154256 ACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTT--GCCAAGTCGCAACTGGCTTCT 154313 | |||| | || | || | | |||| || || |||||||||||||| Sbjct 2125 TGAACCTTTATACGTTTCATAGGTGCCAT--ATTTTTCAGCTAATTCGCAACTGGCTTCC 2182 Query 154314 AACGCCGCATAGTATACGGTTTCGGCAATTTG 154345 || || ||||||| | |||||| ||||| Sbjct 2183 AATGCGCCATAGTAAATAGTTTCGAATATTTG 2214 >seq3141 Length=2848 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | || || ||||| ||||| || || || || | ||||| | || Sbjct 1556 AAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATC 1497 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||||| ||||| |||| || ||||| || || || ||||||||||| || || Sbjct 1496 TTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATC 1437 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| ||| ||| || | ||||| | || || || | ||| | ||| Sbjct 1436 TTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGT 1377 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||||||||||||||||||||| Sbjct 1376 CTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343 >seq7104 Length=1453772 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || || || ||||||||||| | | ||||| |||| Sbjct 422149 AAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTC 422090 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || |||||| | || | || || || || || || ||||||||||| || Sbjct 422089 TTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTC 422030 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| ||| || | ||||| | || || || | ||| | || Sbjct 422029 TTG-AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGG 421971 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||| ||||| || || ||||| ||||||||||| Sbjct 421970 TCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || |||| ||| | || ||||| || ||||| || || || | Sbjct 422392 ACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGA 422333 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||| ||||| || |||| | || || || || || || Sbjct 422332 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGG 422273 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| ||||| ||||| ||| ||| | |||||| | || | Sbjct 422272 GATTCCTTCCTTATCTTGAATTTTA-GCTTTGACATTCTCAATTGTATCGGAAGGCTCAA 422214 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||| | ||| || || ||||||||||| |||||||| ||||| Sbjct 422213 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165 >seq7099 Length=1521921 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 34436 TACGAACCGGGCAAACGTCGTTGGCTTAAAATTAAAAAAGACTATCTATGTAACGGCGAA 34495 ||| |||| ||||||||| ||||||| ||| | || || |||||||| | | |||| || Sbjct 351810 TACCAACCCGGCAAACGTGGTTGGCTGAAAGTAAAGAAGGACTATCTTTTTGGCGGCAAA 351751 Query 34496 ATGGCGGATTCGATTGATTTAGTCGTGCTGGGCGCTCAGATGGGTACTGGGAAAAAAGGA 34555 ||||| || | || || || |||||||||||| | | ||| | || |||||||| Sbjct 351750 ATGGCCGACACCGCAGACTTGGTTGTGCTGGGCGCTTGGTTTGGTTCCGGCAAAAAAGGT 351691 Query 34556 GGTCAATTGTCGATATTTTTGATGGGATGC 34585 ||| ||| ||||| | ||||| ||| Sbjct 351690 GGTATTTTGAGTATATTCCTAATGGGCTGC 351661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499600044317040