Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq7156 131 2e-25
seq7104 109 5e-19
seq7084 95.1 1e-14
seq3141 89.7 5e-13
>seq7156
Length=3407544
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||||| ||| ||||| | | ||||||||||||| |||||||||||| |
Sbjct 1526508 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1526567
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || || | |||||| |||| |||| | ||||||||| || || ||
Sbjct 1526568 AAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 1526627
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| |||||||| |||||| ||| | | ||| | |||||| | | ||| |||
Sbjct 1526628 ATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACC 1526687
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || |||||||| | ||||| || |||||||||||
Sbjct 1526688 TCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 1526734
>seq7104
Length=1453772
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | ||| ||||| | | |||||||| || |||||||| |||
Sbjct 422164 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 422105
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || ||| || ||||||||||||| | |||||| ||| ||||| || || ||
Sbjct 422104 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 422045
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||||||||| ||| | || | ||||| | ||| | || |||| | || |
Sbjct 422044 GATTCCTTCTTTGTC-TTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 421986
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||||| || || || || || |||||
Sbjct 421985 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 421937
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || || || | ||||||||||| | || ||||| ||||| || |||||| |
Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| | ||||| || | | || | ||| ||||| || || ||
Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| || || ||| |||| | ||| | | || | || |||| | ||| ||
Sbjct 422271 ATTCCTTCCTTATCT-TGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAAC 422213
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | ||||| || |||| |||||| || ||||||||||||
Sbjct 422212 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 422164
>seq7084
Length=1258986
Score = 95.1 bits (104), Expect = 1e-14
Identities = 234/351 (67%), Gaps = 3/351 (1%)
Strand=Plus/Plus
Query 153020 CAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCT 153079
||||| || || || |||||||| || |||| | ||| || | ||| | |||
Sbjct 1879 CAAGTGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTAGA 1938
Query 153080 AGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCAT 153139
|||| | |||||||| || || || ||||| | |||||||| || | || || |||||
Sbjct 1939 AGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCAT 1998
Query 153140 GTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCT 153198
| ||| | || |||||| || || | || || ||| | | || |||||||| |
Sbjct 1999 GGGCGCAAGCAGCAAAGAGTTGCGGATACCATGTTGCTTTATTTTC-TCCTTCAATTCGG 2057
Query 153199 GCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGAC 153258
||||| ||| || | | ||||| | ||||||||| |||||||| | || ||
Sbjct 2058 TCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAAAATACCCTTAC 2117
Query 153259 TGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAG 153318
| |||| || | |||| ||| |||| | || || | |||||| || |
Sbjct 2118 TAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGG 2177
Query 153319 CCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGG 153369
| || | ||||||||||| || |||||| ||||| | ||| | |||||
Sbjct 2178 CTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATTCA-AACGG 2227
>seq3141
Length=2848
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| |||| | ||| | |||||||| | | ||||| || ||||| || |||||
Sbjct 1571 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 1512
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || || || | ||| || |||| | |||||||||||||| || || ||
Sbjct 1511 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGG 1452
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| || || ||| |||| | |||| ||||| | || || | | ||| |
Sbjct 1451 AATTCCTTCCTTATC-TTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAA 1393
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
|||| | || | || ||||| || || |||||||| ||||| ||||| |||
Sbjct 1392 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGCT 1340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496217947295520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |