Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq7104 116 3e-21 seq7156 107 1e-18 seq3141 100 2e-16 >seq7104 Length=1453772 Score = 116 bits (128), Expect = 3e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | | ||| |||||||| ||||| || || || |||||||||||| Sbjct 422165 TGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGG 422106 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | ||||||| | |||||| || || | || ||||| ||||| || | Sbjct 422105 ACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGG 422046 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | |||||||| ||||| ||| || ||| ||| |||| ||||||||| ||| | Sbjct 422045 GGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 421986 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 | || | || ||||| || || |||| || || || || |||||||| || |||| Sbjct 421985 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 421929 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || ||||||||| || || || || || || || || || ||| Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || || |||||||||||| | |||||||| ||||| || || Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||| ||| ||| | || || |||||| | || || Sbjct 422271 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACC 422212 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| || |||| |||||| || ||||| ||||| Sbjct 422211 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165 >seq7156 Length=3407544 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| ||||| ||||| || || ||||| |||||||| ||| || || || | ||| Sbjct 1526525 AACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGACCATCT 1526582 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || ||| | |||||||||||||| || || || || || ||||| Sbjct 1526583 TCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTGTCT 1526642 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| ||| |||| || || || | || || |||||||| ||||| Sbjct 1526643 TGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTC 1526702 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || | ||||| || ||||| ||||| || Sbjct 1526703 TTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737 >seq3141 Length=2848 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 |||||||| | ||||| ||||| || || || || || | ||| || | |||| Sbjct 1552 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCA--GCCAATGTGCGACCATCTT 1495 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| || || ||| | || | ||||||||| || |||||||||||||| || Sbjct 1494 CCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTT 1435 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| || ||| ||| |||||||| | || || || | || ||||| | Sbjct 1434 GAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCT 1375 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || || |||||||| ||||||||||| Sbjct 1374 TACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357360786946310