Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 116 3e-21
seq7156 107 1e-18
seq3141 100 2e-16
>seq7104
Length=1453772
Score = 116 bits (128), Expect = 3e-21
Identities = 168/237 (71%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | | | ||| |||||||| ||||| || || || ||||||||||||
Sbjct 422165 TGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGG 422106
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | ||||||| | |||||| || || | || ||||| ||||| || |
Sbjct 422105 ACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGG 422046
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| |||||||| ||||| ||| || ||| ||| |||| ||||||||| ||| |
Sbjct 422045 GGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAA 421986
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184
| || | || ||||| || || |||| || || || || |||||||| || ||||
Sbjct 421985 CCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 421929
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || || | || ||||||||| || || || || || || || || || |||
Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | || || || |||||||||||| | |||||||| ||||| || ||
Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || |||||| ||| ||| | || || |||||| | || ||
Sbjct 422271 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACC 422212
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || |||||||| || |||| |||||| || ||||| |||||
Sbjct 422211 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165
>seq7156
Length=3407544
Score = 107 bits (118), Expect = 1e-18
Identities = 154/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024
||| ||||| ||||| || || ||||| |||||||| ||| || || || | |||
Sbjct 1526525 AACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGACCATCT 1526582
Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084
|| |||||||| || ||| | |||||||||||||| || || || || || |||||
Sbjct 1526583 TCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTGTCT 1526642
Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144
||||| ||| ||| |||| || || || | || || |||||||| |||||
Sbjct 1526643 TGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTC 1526702
Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
||||| || | ||||| || ||||| ||||| ||
Sbjct 1526703 TTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737
>seq3141
Length=2848
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025
|||||||| | ||||| ||||| || || || || || | ||| || | ||||
Sbjct 1552 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCA--GCCAATGTGCGACCATCTT 1495
Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085
| ||||| || || ||| | || | ||||||||| || |||||||||||||| ||
Sbjct 1494 CCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTT 1435
Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145
||||||| || ||| ||| |||||||| | || || || | || ||||| |
Sbjct 1434 GAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCT 1375
Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|||| || || |||||||| |||||||||||
Sbjct 1374 TACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357360786946310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |