Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq7084 134 1e-26
seq7156 118 1e-21
seq7104 118 1e-21
seq3141 104 2e-17
>seq7084
Length=1258986
Score = 134 bits (148), Expect = 1e-26
Identities = 445/684 (65%), Gaps = 16/684 (2%)
Strand=Plus/Minus
Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAA 124053
||||||| |||||| ||||| || ||||| ||||| || || |||||| | || |||||
Sbjct 2215 GCAAATATTCGAAACTATTTACTATGGCGCATTGGAAGCCAGTTGCGAATTAGCTGAAAA 2156
Query 124054 TTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACG 124113
| | ||| | || |||| || || || | || |||||||| ||||| |
Sbjct 2155 AT-ATGGCACCTATGAAACGTATAAAGGTTCACCCGTTAGTAAGGGTATTTTACAGTATG 2097
Query 124114 ACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATAT 124173
|||||||| || ||||| || || | ||| | |||| || || || | |||
Sbjct 2096 ACATGTGGGATAAAACACCAACTGATCTTTGGAATTGGACCGAATTGAAGGAGAAAATAA 2037
Query 124174 CGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTC 124233
| || ||| | || ||||| || || | ||| |||||| || || | |||||||
Sbjct 2036 AGCAACATGGTATCCGCAACTCTTTGCTGCTTGCGCCCATGCCAACTGCTTCAACTGCTC 1977
Query 124234 AAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAG 124293
||||| | || ||||| || || || || |||| |||| ||| | || || || |
Sbjct 1976 AAATTATGGGCAACAATGAGTCATTTGAACCGTACACTTCTAATATTTATACACGTCGTG 1917
Query 124294 TGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAA 124353
|| | | || || |||||||| |||||||||| ||| | ||| | | |||
Sbjct 1916 TGCTTTCGGGTGAATTTCAAGTTGTAAATCATCACTTGTTACGCGATCTAACCGAGTTGG 1857
Query 124354 ATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCA 124413
||||| ||||| | ||| || | ||||| | | ||| | | || | |
Sbjct 1856 GTTTGTGGGATGATGATATGAAAAATAATATTATAACCAGTCGCGGCTCCATACAACATA 1797
Query 124414 TCGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAAT----GAA 124468
| | || || || | ||| | | || | || |||||||| || ||||| || |
Sbjct 1796 TTGAATCCATACCACAGCACAT-ACGCGATCTATACAAAACTGTTTGGGAGATTTCCGTG 1738
Query 124469 AAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATC 124528
||| |||||| ||||||| | || || || || | || ||||| ||||| ||
Sbjct 1737 AAAACCTCGATTA----AAATGGCTGCAGATCGCGGTGCATTCATCGATCAGAGTCAGTC 1682
Query 124529 TTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGC 124588
|| ||| | || || || |||| ||| | | | || ||||| | |||
Sbjct 1681 GTTCAACATACACGTGGCTGAGCCCAACTATGGCAAGCTTACTTCTATACATTTCTACGG 1622
Query 124589 GTGGA--GCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGAT 124646
|||| ||| || ||||| |||||||||||||| || | || ||||| || || ||
Sbjct 1621 CTGGAAGGCA--GGTCTCAAGACGGGCATGTATTATTTGCGTACGAAACCAGCTGCAAAT 1564
Query 124647 GCCATTCAATTTACCGTCGACAAA 124670
|| || |||||||| || || |||
Sbjct 1563 GCTATACAATTTACTGTGGATAAA 1540
>seq7156
Length=3407544
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || || || | || || | ||| || ||||| ||||||||||| || || |||
Sbjct 1526505 ATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 1526564
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| |||||||||||||| ||| | ||||| || || || || ||
Sbjct 1526565 GACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGG 1526624
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || ||||| ||||| ||||| ||||| ||| | |||||| |||| ||||
Sbjct 1526625 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 1526684
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | || | || || || |||| ||||| || ||||| |||||
Sbjct 1526685 ACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 1526734
>seq7104
Length=1453772
Score = 118 bits (130), Expect = 1e-21
Identities = 154/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189
|||| ||| || || |||||||| || |||||||| ||| ||| || | | ||| |
Sbjct 422373 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCG--GACAGTGTGCGTCCATCCT 422316
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
|||| ||||| || ||| | ||||| ||||| || || || || || ||||| |||||||
Sbjct 422315 CCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTT 422256
Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
||||||| ||||| || | || ||||||| ||| || || | ||| | ||||
Sbjct 422255 GAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 422196
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || | |||||| || ||||| |||||
Sbjct 422195 TTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165
>seq3141
Length=2848
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|||| ||||| || || || || || |||||||| || | || | ||| |||
Sbjct 1552 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCC 1493
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
||||| ||||| ||| | || | || || || || |||||||| ||||| |||||||||
Sbjct 1492 AATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTTGA 1433
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| || | ||| | || || |||| ||| || || ||||| | || ||
Sbjct 1432 ATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTA 1373
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343
|| || || |||||||| ||||||||||| ||
Sbjct 1372 CCCGTAAGGGTTTTTACGAAAATTTGCATTGC 1341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451962711813360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |