Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq7084 134 1e-26 seq7156 118 1e-21 seq7104 118 1e-21 seq3141 104 2e-17 >seq7084 Length=1258986 Score = 134 bits (148), Expect = 1e-26 Identities = 445/684 (65%), Gaps = 16/684 (2%) Strand=Plus/Minus Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAA 124053 ||||||| |||||| ||||| || ||||| ||||| || || |||||| | || ||||| Sbjct 2215 GCAAATATTCGAAACTATTTACTATGGCGCATTGGAAGCCAGTTGCGAATTAGCTGAAAA 2156 Query 124054 TTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACG 124113 | | ||| | || |||| || || || | || |||||||| ||||| | Sbjct 2155 AT-ATGGCACCTATGAAACGTATAAAGGTTCACCCGTTAGTAAGGGTATTTTACAGTATG 2097 Query 124114 ACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATAT 124173 |||||||| || ||||| || || | ||| | |||| || || || | ||| Sbjct 2096 ACATGTGGGATAAAACACCAACTGATCTTTGGAATTGGACCGAATTGAAGGAGAAAATAA 2037 Query 124174 CGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTC 124233 | || ||| | || ||||| || || | ||| |||||| || || | ||||||| Sbjct 2036 AGCAACATGGTATCCGCAACTCTTTGCTGCTTGCGCCCATGCCAACTGCTTCAACTGCTC 1977 Query 124234 AAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAG 124293 ||||| | || ||||| || || || || |||| |||| ||| | || || || | Sbjct 1976 AAATTATGGGCAACAATGAGTCATTTGAACCGTACACTTCTAATATTTATACACGTCGTG 1917 Query 124294 TGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAA 124353 || | | || || |||||||| |||||||||| ||| | ||| | | ||| Sbjct 1916 TGCTTTCGGGTGAATTTCAAGTTGTAAATCATCACTTGTTACGCGATCTAACCGAGTTGG 1857 Query 124354 ATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCA 124413 ||||| ||||| | ||| || | ||||| | | ||| | | || | | Sbjct 1856 GTTTGTGGGATGATGATATGAAAAATAATATTATAACCAGTCGCGGCTCCATACAACATA 1797 Query 124414 TCGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAAT----GAA 124468 | | || || || | ||| | | || | || |||||||| || ||||| || | Sbjct 1796 TTGAATCCATACCACAGCACAT-ACGCGATCTATACAAAACTGTTTGGGAGATTTCCGTG 1738 Query 124469 AAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATC 124528 ||| |||||| ||||||| | || || || || | || ||||| ||||| || Sbjct 1737 AAAACCTCGATTA----AAATGGCTGCAGATCGCGGTGCATTCATCGATCAGAGTCAGTC 1682 Query 124529 TTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGC 124588 || ||| | || || || |||| ||| | | | || ||||| | ||| Sbjct 1681 GTTCAACATACACGTGGCTGAGCCCAACTATGGCAAGCTTACTTCTATACATTTCTACGG 1622 Query 124589 GTGGA--GCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGAT 124646 |||| ||| || ||||| |||||||||||||| || | || ||||| || || || Sbjct 1621 CTGGAAGGCA--GGTCTCAAGACGGGCATGTATTATTTGCGTACGAAACCAGCTGCAAAT 1564 Query 124647 GCCATTCAATTTACCGTCGACAAA 124670 || || |||||||| || || ||| Sbjct 1563 GCTATACAATTTACTGTGGATAAA 1540 >seq7156 Length=3407544 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || | ||| || ||||| ||||||||||| || || ||| Sbjct 1526505 ATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 1526564 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||||||||| ||| | ||||| || || || || || Sbjct 1526565 GACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGG 1526624 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| ||||| ||||| ||||| ||| | |||||| |||| |||| Sbjct 1526625 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCG 1526684 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || || |||| ||||| || ||||| ||||| Sbjct 1526685 ACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 1526734 >seq7104 Length=1453772 Score = 118 bits (130), Expect = 1e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||| || || |||||||| || |||||||| ||| ||| || | | ||| | Sbjct 422373 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCG--GACAGTGTGCGTCCATCCT 422316 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| ||||| || ||| | ||||| ||||| || || || || || ||||| ||||||| Sbjct 422315 CCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTT 422256 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| ||||| || | || ||||||| ||| || || | ||| | |||| Sbjct 422255 GAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 422196 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | |||||| || ||||| ||||| Sbjct 422195 TTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165 >seq3141 Length=2848 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||||| || || || || || |||||||| || | || | ||| ||| Sbjct 1552 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCC 1493 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| ||||| ||| | || | || || || || |||||||| ||||| ||||||||| Sbjct 1492 AATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTTGA 1433 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| || | ||| | || || |||| ||| || || ||||| | || || Sbjct 1432 ATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTA 1373 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 || || || |||||||| ||||||||||| || Sbjct 1372 CCCGTAAGGGTTTTTACGAAAATTTGCATTGC 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451962711813360