Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq7164 113 6e-20 >seq7164 Length=6205789 Score = 113 bits (124), Expect = 6e-20 Identities = 246/363 (68%), Gaps = 8/363 (2%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||||||||||||||| || | || ||||| | ||||||||| | |||| ||||| Sbjct 6011364 AACCTGTGCCAATACCATCAGCACCATTCACCAAAACCATTGGTATAATTGGTATATACC 6011423 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||||| | |||||||| | || | | || || || || | Sbjct 6011424 ATTGTGGTTCAATCTTTTGACCATCATCAACTTCGTACGTCAACAATGGATCGTCGGCTG 6011483 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAGTTTT--GTGAAGATGTACCT--CGTTTGA 175921 | | || || || | || ||||| || ||||| || || | || | | Sbjct 6011484 GGTGGAATATGAGTCGCG--TCAACGGTGACATTAAGGTGAAAATATAACGAGCGCTCGC 6011541 Query 175922 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 || |||||| |||||| ||||| || || |||||||||| ||||| | | ||| Sbjct 6011542 -ACA-ATCTTTACCACCCTGCAGACGTGTACCGAATTGACCACGGGGCTCCAATAAATTA 6011599 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 ||||| ||||| |||| || | | |||||| ||||| || ||| || || || | Sbjct 6011600 ATATTATTTGATCCCACGTAATTTTGCGCCAAATTGACTATGGTAGCCTGCAGTGACATC 6011659 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 ||||||||||||||||| ||| | || ||||| | | | ||| ||||| || |||| | Sbjct 6011660 TCACCGTGATGGTAGGCGGACATTTCAGCCACTGAACCAGACAATTGCGCAACTTTCACC 6011719 Query 176102 TCA 176104 ||| Sbjct 6011720 TCA 6011722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613452245092560