Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq7156 123 6e-23
seq3141 111 4e-19
>seq7156
Length=3407544
Score = 123 bits (136), Expect = 6e-23
Identities = 166/228 (73%), Gaps = 5/228 (2%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||| || | ||||| || ||||||||||||| ||||||||| | ||| ||
Sbjct 1526514 CGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTG 1526573
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| || |||||||||||||| | |||||| || || || || ||
Sbjct 1526574 CGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCC 1526633
Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
||| || || || ||| || || || ||||| |||||| | | || || || ||
Sbjct 1526634 TCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAA 1526692
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
||||| |||||||| || | ||||| || ||||| || ||||||
Sbjct 1526693 GGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTG---CATTTT 1526737
>seq3141
Length=2848
Score = 111 bits (122), Expect = 4e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492
|| ||||| || || | || ||||||||||| || | |||||||||| |||||||||
Sbjct 1540 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1481
Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552
||||| || |||||||| || || || ||||||||| || ||||| || |||
Sbjct 1480 GCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTTGAATTTTGGACTTA 1421
Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612
|| ||| | || || | | || || || | ||||| ||||||||||| || |||
Sbjct 1420 ACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 1361
Query 199613 TTCACAAAAATTTG 199626
|| || ||||||||
Sbjct 1360 TTTACGAAAATTTG 1347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178813358050122
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |