Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 136 9e-27
seq3141 127 5e-24
seq7156 122 2e-22
>seq7104
Length=1453772
Score = 136 bits (150), Expect = 9e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
||||| || ||||| || || || |||||||||| ||||| | || ||||| || ||
Sbjct 422139 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCCAGTTGT 422080
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || ||||| | |||||||| ||||| || || ||||||||||||||||| ||
Sbjct 422079 TTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTTA 422020
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || ||||| || || || ||| || || || || | ||||| || |||
Sbjct 422019 GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTC 421960
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
|| || || ||||| | ||||||||
Sbjct 421959 AAGGTCTTCACGAAGATTTGCATTT 421935
Score = 127 bits (140), Expect = 5e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| |||||||| || || |||||||| || |||| || || | ||||| || | |||
Sbjct 422367 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 422308
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || ||||| || | |||||||| ||||| || || ||||| || |||||||||||
Sbjct 422307 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTA 422248
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||||| |||||||| || || ||| || || || | || | || ||||| |||
Sbjct 422247 GCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTC 422188
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
|||||||| ||||| | |||||
Sbjct 422187 AAAGTTTTGACGAAAATCTGCAT 422165
Score = 89.7 bits (98), Expect = 1e-12
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 195027 TGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086
||||||||| || || ||||| ||||||||| || ||||| ||||| || || |||
Sbjct 422506 TGGAGGAATACCCTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGG 422447
Query 195087 TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || || || |||| || || || ||||||||||| ||||| | ||||||
Sbjct 422446 TTCAACCTCCAGCGTAATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 422393
>seq3141
Length=2848
Score = 127 bits (140), Expect = 5e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| |||||||| |||||||| || || || | || | |||||||| | ||||| ||
Sbjct 1540 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1481
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
||||| || || || ||||| || || ||||| ||||| || ||||||||||| |||
Sbjct 1480 GCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTTGAATTTTGGACTTA 1421
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| | ||||| || |||||| || || ||||| || | ||||| || || | |||
Sbjct 1420 ACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 1361
Query 195124 TTTACGAACACTTGCATT 195141
|||||||| | |||||||
Sbjct 1360 TTTACGAAAATTTGCATT 1343
>seq7156
Length=3407544
Score = 122 bits (134), Expect = 2e-22
Identities = 152/206 (74%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996
|| || || ||||| ||||| || ||||| |||| |||| || | |||||||| | ||
Sbjct 1526532 TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTCCAATTG 1526590
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || |||||||| | || ||||| ||||| || || || ||||||||||| |||||
Sbjct 1526591 TTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTGTCTTGGATTTT 1526650
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||| || || |||||||| ||| || || || | ||| | ||||| || ||
Sbjct 1526651 AGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGT 1526710
Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142
|| ||||| ||||| | |||||||
Sbjct 1526711 TAAGGTTTTGACGAAAATCTGCATTT 1526736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109379733640322
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |