Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7104 136 9e-27 seq3141 127 5e-24 seq7156 122 2e-22 >seq7104 Length=1453772 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| || || || |||||||||| ||||| | || ||||| || || Sbjct 422139 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCCAGTTGT 422080 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | |||||||| ||||| || || ||||||||||||||||| || Sbjct 422079 TTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGAATCTTA 422020 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || ||||| || || || ||| || || || || | ||||| || ||| Sbjct 422019 GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTC 421960 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 || || || ||||| | |||||||| Sbjct 421959 AAGGTCTTCACGAAGATTTGCATTT 421935 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||| || || |||||||| || |||| || || | ||||| || | ||| Sbjct 422367 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 422308 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 422307 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTA 422248 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| |||||||| || || ||| || || || | || | || ||||| ||| Sbjct 422247 GCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTC 422188 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| ||||| | ||||| Sbjct 422187 AAAGTTTTGACGAAAATCTGCAT 422165 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 195027 TGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT 195086 ||||||||| || || ||||| ||||||||| || ||||| ||||| || || ||| Sbjct 422506 TGGAGGAATACCCTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGG 422447 Query 195087 TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || || |||| || || || ||||||||||| ||||| | |||||| Sbjct 422446 TTCAACCTCCAGCGTAATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 422393 >seq3141 Length=2848 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || |||||||| |||||||| || || || | || | |||||||| | ||||| || Sbjct 1540 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1481 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || || || ||||| || || ||||| ||||| || ||||||||||| ||| Sbjct 1480 GCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTTGAATTTTGGACTTA 1421 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || | ||||| || |||||| || || ||||| || | ||||| || || | ||| Sbjct 1420 ACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGGTT 1361 Query 195124 TTTACGAACACTTGCATT 195141 |||||||| | ||||||| Sbjct 1360 TTTACGAAAATTTGCATT 1343 >seq7156 Length=3407544 Score = 122 bits (134), Expect = 2e-22 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || || ||||| ||||| || ||||| |||| |||| || | |||||||| | || Sbjct 1526532 TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTCCAATTG 1526590 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | || ||||| ||||| || || || ||||||||||| ||||| Sbjct 1526591 TTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTGTCTTGGATTTT 1526650 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || |||||||| ||| || || || | ||| | ||||| || || Sbjct 1526651 AGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTCTTACCAGT 1526710 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 || ||||| ||||| | ||||||| Sbjct 1526711 TAAGGTTTTGACGAAAATCTGCATTT 1526736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109379733640322