Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7155 288 1e-72 seq7084 187 3e-42 >seq7155 Length=3116674 Score = 288 bits (318), Expect = 1e-72 Identities = 490/704 (70%), Gaps = 10/704 (1%) Strand=Plus/Plus Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854 ||| || ||||||| ||||| | ||| | | |||||||| || ||||| || || Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914 || | || || || | ||||| || || || || || || || || || || | | Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTAT---TTC 2758710 Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAG---ATGTTTAAACATCAAACATGCAAAATC 18971 ||| || |||||| || | | | | ||||| |||||||||||||| || || Sbjct 2758711 AACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 2758770 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||||| |||||||| |||| || | |||||| |||||||| || || ||||| | Sbjct 2758771 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 2758830 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091 || | ||| || | |||||| || |||||||| ||| ||||| |||||||| || Sbjct 2758831 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAAC 2758890 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTCA 19150 || ||||| |||| || | ||| ||| || | | | | | | | |||||| | Sbjct 2758891 GGCAGCAAATGCAATTACACGTTCACCA-AAGTTGGCTGACTTCGAGGAAATCCAAGCAA 2758949 Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210 | |||||||| ||||| ||||| |||||||||||||||| ||| |||| || Sbjct 2758950 GCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAAT 2759009 Query 19211 TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAA 19270 | | | | | || |||| ||||| ||| || |||| || |||||||| ||||| | Sbjct 2759010 TCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCA 2759069 Query 19271 TATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCAC 19330 ||| || || || || |||||||| || || || | ||| ||||| | || ||||| Sbjct 2759070 CATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCT 2759129 Query 19331 TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390 || || | ||| || | ||||||||| || || |||||| || || ||||| |||| Sbjct 2759130 GGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTA 2759189 Query 19391 ATACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATGTATTCCAATCATTAATATCT 19449 | || ||| |||||||||| |||| | | || | || |||||||| |||||| Sbjct 2759190 ACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGT-GCCCAATCATCCATATCT 2759248 Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| | ||||||||| || |||||||| || || || ||||| Sbjct 2759249 TTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 2759292 >seq7084 Length=1258986 Score = 187 bits (206), Expect = 3e-42 Identities = 571/875 (65%), Gaps = 12/875 (1%) Strand=Plus/Plus Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 ||||| | ||||| ||||| ||| || || || || | ||| || |||||| | Sbjct 2274 ATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGA 2333 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 ||||| || || || || | ||| | ||||| || || || | || |||||||| || Sbjct 2334 TTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAATG 2393 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 ||||| | | || ||||| | || || ||||| ||||| Sbjct 2394 CTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGTTCATATTTC 2453 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||||||| || || || || || | || | || ||| || ||||| | | ||| Sbjct 2454 AGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTGGA 2513 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 ||||| | ||||| || ||||| || ||| | ||||||||| ||| |||||||| Sbjct 2514 CACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCCAC 2573 Query 48234 AGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 | || ||| || ||||| || | | | ||||| || ||| | || | || | || Sbjct 2574 AAGGC-ATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGTTTTTCTTCAAATC 2632 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 | ||| || | |||||||||||||||||||| | || || || | | || || || Sbjct 2633 CAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCG 2692 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 |||| | |||||||| | ||| | || |||| || | |||| ||||| || || Sbjct 2693 TTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCAC 2752 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---AT- 48468 | |||||||||| | | ||| || |||| ||| | | || | || | ||| || Sbjct 2753 CAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTTTGCGCGTATGCAATG 2812 Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCG-TTTAAGG 48527 ||| || | ||| ||||| || || ||| || || | ||||| | | | | Sbjct 2813 TAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAG 2868 Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587 | | | |||| || || || ||| || | ||| | | |||||| || |||| | Sbjct 2869 ATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAAT 2927 Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 ||||| || ||| | | | || | |||||||| ||||| |||| | || Sbjct 2928 TGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCG 2987 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707 || | ||| || || ||||| || | | ||| || || ||||||||| || | Sbjct 2988 GAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCA 3047 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 |||||||||||||||| || |||| |||||||||||| ||| | || | | ||| Sbjct 3048 ACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACTTTAGCAAATAG 3107 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || ||| | |||||||||||||||||| || || Sbjct 3108 GAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 Score = 172 bits (190), Expect = 6e-38 Identities = 446/676 (66%), Gaps = 7/676 (1%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| ||||||||||| | || | ||| |||| ||| || || ||||||||||| || Sbjct 1540 TTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCC 1599 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||||| | |||| |||| || |||||||| ||| ||| | || ||| | || Sbjct 1600 CGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTAAGCTTGCCATAGTTGGG 1659 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | | || || || | || ||||||||||| || |||||||| | ||| || || Sbjct 1660 CTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTGCAGC 1719 Query 47153 CATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 ||| | ||| | || || | ||||||| || ||||| || | | |||| Sbjct 1720 CATTT-TAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGT 1778 Query 47212 CTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 | ||| | |||| | ||| ||| || || || | | |||||| || ||||| | Sbjct 1779 GCTGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTTTCA 1838 Query 47269 attcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAACAATT 47327 |||| ||| | || |||| || | | ||| ||| |||| |||| | Sbjct 1839 TATCATCATCCCACAAACCCAACTCGGTTAGATCGCGTAACAAG-TGATGATTTACAACT 1897 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||| || || || || | ||| |||| |||||| || || ||||| | || Sbjct 1898 TGAAATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATGAC 1957 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||| || || | ||||||||||||||| || || ||||||| |||| | || Sbjct 1958 TCATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAG 2017 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || | | |||| || | ||| | |||||| ||||||||| | | Sbjct 2018 TTGCGGATACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTT 2077 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 || || ||| | ||||| || | ||| || ||||| | || ||||| ||||| Sbjct 2078 GGTGTTTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGGTGAACCTTTATAC 2137 Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 |||| ||| | || ||| || ||| | ||| ||||| ||||||||||| | ||| || Sbjct 2138 GTTTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCCATAGTAA 2197 Query 47628 ATTGTTTCAAATATTT 47643 || ||||| ||||||| Sbjct 2198 ATAGTTTCGAATATTT 2213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562058449104240