Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 288 1e-72
seq7084 187 3e-42
>seq7155
Length=3116674
Score = 288 bits (318), Expect = 1e-72
Identities = 490/704 (70%), Gaps = 10/704 (1%)
Strand=Plus/Plus
Query 18795 ATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAAC 18854
||| || ||||||| ||||| | ||| | | |||||||| || ||||| || ||
Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653
Query 18855 AGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC 18914
|| | || || || | ||||| || || || || || || || || || || | |
Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTAT---TTC 2758710
Query 18915 AACTCTATCTTCATTAGGAGGGTATAGAAG---ATGTTTAAACATCAAACATGCAAAATC 18971
||| || |||||| || | | | | ||||| |||||||||||||| || ||
Sbjct 2758711 AACAATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTC 2758770
Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031
|||||| |||||||| |||| || | |||||| |||||||| || || ||||| |
Sbjct 2758771 ACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAA 2758830
Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091
|| | ||| || | |||||| || |||||||| ||| ||||| |||||||| ||
Sbjct 2758831 ACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAAC 2758890
Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCATTTCA 19150
|| ||||| |||| || | ||| ||| || | | | | | | | |||||| |
Sbjct 2758891 GGCAGCAAATGCAATTACACGTTCACCA-AAGTTGGCTGACTTCGAGGAAATCCAAGCAA 2758949
Query 19151 GTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACA 19210
| |||||||| ||||| ||||| |||||||||||||||| ||| |||| ||
Sbjct 2758950 GCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAAT 2759009
Query 19211 TACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAA 19270
| | | | | || |||| ||||| ||| || |||| || |||||||| ||||| |
Sbjct 2759010 TCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCA 2759069
Query 19271 TATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCAC 19330
||| || || || || |||||||| || || || | ||| ||||| | || |||||
Sbjct 2759070 CATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCT 2759129
Query 19331 TACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTA 19390
|| || | ||| || | ||||||||| || || |||||| || || ||||| ||||
Sbjct 2759130 GGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTA 2759189
Query 19391 ATACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATGTATTCCAATCATTAATATCT 19449
| || ||| |||||||||| |||| | | || | || |||||||| ||||||
Sbjct 2759190 ACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGT-GCCCAATCATCCATATCT 2759248
Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||||| | ||||||||| || |||||||| || || || |||||
Sbjct 2759249 TTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 2759292
>seq7084
Length=1258986
Score = 187 bits (206), Expect = 3e-42
Identities = 571/875 (65%), Gaps = 12/875 (1%)
Strand=Plus/Plus
Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993
||||| | ||||| ||||| ||| || || || || | ||| || |||||| |
Sbjct 2274 ATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGA 2333
Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053
||||| || || || || | ||| | ||||| || || || | || |||||||| ||
Sbjct 2334 TTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAATG 2393
Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113
||||| | | || ||||| | || || ||||| |||||
Sbjct 2394 CTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGTTCATATTTC 2453
Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173
||||||||| || || || || || | || | || ||| || ||||| | | |||
Sbjct 2454 AGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTGGA 2513
Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233
||||| | ||||| || ||||| || ||| | ||||||||| ||| ||||||||
Sbjct 2514 CACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCCAC 2573
Query 48234 AGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292
| || ||| || ||||| || | | | ||||| || ||| | || | || | ||
Sbjct 2574 AAGGC-ATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGTTTTTCTTCAAATC 2632
Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352
| ||| || | |||||||||||||||||||| | || || || | | || || ||
Sbjct 2633 CAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCG 2692
Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412
|||| | |||||||| | ||| | || |||| || | |||| ||||| || ||
Sbjct 2693 TTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCAC 2752
Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---AT- 48468
| |||||||||| | | ||| || |||| ||| | | || | || | ||| ||
Sbjct 2753 CAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTTTGCGCGTATGCAATG 2812
Query 48469 TACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCG-TTTAAGG 48527
||| || | ||| ||||| || || ||| || || | ||||| | | | |
Sbjct 2813 TAC--GTT--CAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAG 2868
Query 48528 GTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATT 48587
| | | |||| || || || ||| || | ||| | | |||||| || |||| |
Sbjct 2869 ATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAAT 2927
Query 48588 TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647
||||| || ||| | | | || | |||||||| ||||| |||| | ||
Sbjct 2928 TGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCG 2987
Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707
|| | ||| || || ||||| || | | ||| || || ||||||||| || |
Sbjct 2988 GAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCA 3047
Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767
|||||||||||||||| || |||| |||||||||||| ||| | || | | |||
Sbjct 3048 ACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACTTTAGCAAATAG 3107
Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802
|| ||| | |||||||||||||||||| || ||
Sbjct 3108 GAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142
Score = 172 bits (190), Expect = 6e-38
Identities = 446/676 (66%), Gaps = 7/676 (1%)
Strand=Plus/Plus
Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032
||| ||||||||||| | || | ||| |||| ||| || || ||||||||||| ||
Sbjct 1540 TTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCC 1599
Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092
||||| | |||| |||| || |||||||| ||| ||| | || ||| | ||
Sbjct 1600 CGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTAAGCTTGCCATAGTTGGG 1659
Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152
|| | | || || || | || ||||||||||| || |||||||| | ||| || ||
Sbjct 1660 CTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTGCAGC 1719
Query 47153 CATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211
||| | ||| | || || | ||||||| || ||||| || | | ||||
Sbjct 1720 CATTT-TAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGT 1778
Query 47212 CTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268
| ||| | |||| | ||| ||| || || || | | |||||| || ||||| |
Sbjct 1779 GCTGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTTTCA 1838
Query 47269 attcatttgaccaaagttttcgttcagtta-atgtttttaaAAGATGAGGATTAACAATT 47327
|||| ||| | || |||| || | | ||| ||| |||| |||| |
Sbjct 1839 TATCATCATCCCACAAACCCAACTCGGTTAGATCGCGTAACAAG-TGATGATTTACAACT 1897
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
|||||||| || || || || | ||| |||| |||||| || || ||||| | ||
Sbjct 1898 TGAAATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATGAC 1957
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||| || || | ||||||||||||||| || || ||||||| |||| | ||
Sbjct 1958 TCATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAG 2017
Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507
|| | | |||| || | ||| | |||||| ||||||||| | |
Sbjct 2018 TTGCGGATACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTT 2077
Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567
|| || ||| | ||||| || | ||| || ||||| | || ||||| |||||
Sbjct 2078 GGTGTTTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGGTGAACCTTTATAC 2137
Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627
|||| ||| | || ||| || ||| | ||| ||||| ||||||||||| | ||| ||
Sbjct 2138 GTTTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCCATAGTAA 2197
Query 47628 ATTGTTTCAAATATTT 47643
|| ||||| |||||||
Sbjct 2198 ATAGTTTCGAATATTT 2213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562058449104240
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