Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3141 143 2e-29 seq7104 141 7e-29 seq7156 138 9e-28 seq7143 87.8 1e-12 >seq3141 Length=2848 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | |||||||| | ||||| ||||| || ||||| || || || Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||||||||| || || || || | |||||||||||| |||||| Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||||||||| || ||| ||| | ||| || || | || || Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1391 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | |||||||| || || ||||| Sbjct 1390 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344 >seq7104 Length=1453772 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | ||| |||| ||||||||| || || ||||| || || ||||| || |||| Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || || || || || |||||||| |||||||| || || Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||||||||| ||| ||| | || | || || || | || || Sbjct 422271 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACC 422212 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||||| ||||| || || |||||||| || || ||||||||| Sbjct 422211 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 422164 >seq7156 Length=3407544 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| ||||| || || ||||| || ||||| |||| | || | | Sbjct 1526519 ACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 1526578 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || || || || ||||||||||||||||| || || || || ||||| Sbjct 1526579 ATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTT 1526638 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| ||||| ||| ||| |||| | |||||||| | || || || | |||| Sbjct 1526639 GTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGAT 1526698 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| ||||| || || |||||||| Sbjct 1526699 GGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 1526734 >seq7143 Length=2789641 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 |||||||||||| ||| | ||||| ||||| |||||||| || ||||| || || | Sbjct 1275187 CATAACCGTTGGAATCTCTGCCATCTAAACTATATTTGTCATTTAAATAAATTGCAGTTT 1275128 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 || || || || || | |||||||| | ||| ||||| |||||||| | | | Sbjct 1275127 CTAGCGCAGCTTCTGGTGACTTGGACCATTCCAGTATCTTTTTGGCCCAATACTTACGAA 1275068 Query 13881 TATATCCGTGCATTTTGCCTT 13901 | |||||||||||||||||| Sbjct 1275067 GAAATCCGTGCATTTTGCCTT 1275047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396243790778262