Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7141 132 4e-26 seq7104 107 1e-18 seq3141 89.7 4e-13 seq7156 87.8 1e-12 >seq7141 Length=2858276 Score = 132 bits (146), Expect = 4e-26 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9052 ACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCC 9111 |||||| ||| | || || || || | ||||| || ||||||||||| | ||| || Sbjct 159916 ACCTCTTCCAATTCTGGGTAGAAAATACGCTCACAGATAAATTGAGCAATGCGGTCTCCT 159857 Query 9112 TTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTG 9171 ||||| | || ||| || |||||||| || | || || |||| |||||| | | Sbjct 159856 CGTTTCACTTCGAAATCTTCATCTGAATGATTAAATAATACAACACCCAAGTTACCACGG 159797 Query 9172 TAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAG 9231 || || ||||| | || |||||||| || || || |||| ||| || |||||||||||| Sbjct 159796 TAGTCTTCATCTACGACTCCAGCACCAACATCTATAAAGTTCTTAACAGCTAGTCCAGAG 159737 Query 9232 CGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACC 9291 || ||||||| || ||||| ||||| | || | ||| || |||| || ||| | ||| Sbjct 159736 CGTGGCGCGACACGTCCGTAAGATCCCTCTGGAACTTGTACTTGCAAATCAGTCTTCACC 159677 Query 9292 A 9292 | Sbjct 159676 A 159676 >seq7104 Length=1453772 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || |||||||| ||| || || |||||||| || || || || | || | || ||| Sbjct 422373 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 422314 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| || || || || |||| || |||||||| | ||| | || ||||| || | Sbjct 422313 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 422254 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || | ||| ||||||| || || |||||| Sbjct 422253 ATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 422194 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||||||| || ||||||||||| Sbjct 422193 CCCGTCAAAGTTTTGACGAAAATCTGCAT 422165 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| || | |||||||| || || ||| || || || |||||||| || Sbjct 422164 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 422105 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| || ||||||||||| || | || |||||||| | ||| Sbjct 422104 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 422045 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || || ||||| |||||| ||| ||| | | || || || | || || Sbjct 422044 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 421985 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || ||||| || || || || || ||||| Sbjct 421984 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 421937 >seq3141 Length=2848 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || || || || | || ||||| | || |||||| |||||||| || |||| Sbjct 1572 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 1513 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | ||| | || ||||| ||||| ||||| || || || ||||||||||| | | Sbjct 1512 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCG 1453 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| || ||| || || ||| | | || || || | ||| | Sbjct 1452 GAATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAA 1393 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| | || || || || ||||| | |||||||| ||||| ||||| Sbjct 1392 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344 >seq7156 Length=3407544 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||||| || || ||| ||||| || ||||| || || | | ||| Sbjct 1526517 AGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGA 1526576 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || ||||| || |||| ||||||||||| | ||| | ||||| Sbjct 1526577 CCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCT 1526636 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||| ||| | | | || || | ||| ||||| | || Sbjct 1526637 TTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTG 1526696 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || || ||||| || ||||||||||| Sbjct 1526697 ATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 1526734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380904330576618