Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq7141 132 4e-26
seq7104 107 1e-18
seq3141 89.7 4e-13
seq7156 87.8 1e-12
>seq7141
Length=2858276
Score = 132 bits (146), Expect = 4e-26
Identities = 174/241 (72%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 9052 ACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCC 9111
|||||| ||| | || || || || | ||||| || ||||||||||| | ||| ||
Sbjct 159916 ACCTCTTCCAATTCTGGGTAGAAAATACGCTCACAGATAAATTGAGCAATGCGGTCTCCT 159857
Query 9112 TTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTG 9171
||||| | || ||| || |||||||| || | || || |||| |||||| | |
Sbjct 159856 CGTTTCACTTCGAAATCTTCATCTGAATGATTAAATAATACAACACCCAAGTTACCACGG 159797
Query 9172 TAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAG 9231
|| || ||||| | || |||||||| || || || |||| ||| || ||||||||||||
Sbjct 159796 TAGTCTTCATCTACGACTCCAGCACCAACATCTATAAAGTTCTTAACAGCTAGTCCAGAG 159737
Query 9232 CGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACC 9291
|| ||||||| || ||||| ||||| | || | ||| || |||| || ||| | |||
Sbjct 159736 CGTGGCGCGACACGTCCGTAAGATCCCTCTGGAACTTGTACTTGCAAATCAGTCTTCACC 159677
Query 9292 A 9292
|
Sbjct 159676 A 159676
>seq7104
Length=1453772
Score = 107 bits (118), Expect = 1e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|| |||||||| ||| || || |||||||| || || || || | || | || |||
Sbjct 422373 ACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 422314
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
||||| || || || || |||| || |||||||| | ||| | || ||||| || |
Sbjct 422313 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 422254
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || ||| ||| | | | || || | ||| ||||||| || || ||||||
Sbjct 422253 ATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 422194
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||||||||||| || |||||||||||
Sbjct 422193 CCCGTCAAAGTTTTGACGAAAATCTGCAT 422165
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || | ||| || | |||||||| || || ||| || || || |||||||| ||
Sbjct 422164 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 422105
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || |||| |||| || ||||||||||| || | || |||||||| | |||
Sbjct 422104 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 422045
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| || || ||||| |||||| ||| ||| | | || || || | || ||
Sbjct 422044 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 421985
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || || || ||||| || || || || || |||||
Sbjct 421984 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 421937
>seq3141
Length=2848
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || || || || | || ||||| | || |||||| |||||||| || ||||
Sbjct 1572 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 1513
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| | ||| | || ||||| ||||| ||||| || || || ||||||||||| | |
Sbjct 1512 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCG 1453
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || ||||| || ||| || || ||| | | || || || | ||| |
Sbjct 1452 GAATTCCTTCCTTATCTTGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAA 1393
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| | || || || || ||||| | |||||||| ||||| |||||
Sbjct 1392 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344
>seq7156
Length=3407544
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||||||| || || ||| ||||| || ||||| || || | | |||
Sbjct 1526517 AGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGA 1526576
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| || || ||||| || |||| ||||||||||| | ||| | |||||
Sbjct 1526577 CCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCT 1526636
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || || ||| ||| | | | || || | ||| ||||| | ||
Sbjct 1526637 TTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTG 1526696
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || || ||||| || |||||||||||
Sbjct 1526697 ATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 1526734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380904330576618
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |