Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq7156 104 2e-17 seq3141 82.4 6e-11 >seq7156 Length=3407544 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 |||||||| || || || ||||| ||||| ||||| ||||| ||| || || ||| Sbjct 1526737 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCT 1526678 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | || |||| |||||| ||||||||||| | ||| |||| Sbjct 1526677 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGAT 1526618 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | | ||||| || || ||||||||||||||| | || || |||| || Sbjct 1526617 CAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTAC 1526558 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| ||||| || || || || || |||| Sbjct 1526557 AACATCCAAAAGGAGTCAACCCTCCATTTGGT 1526526 >seq3141 Length=2848 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28542 GATTGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAA 28601 |||||| | ||||||||| || |||||||| | |||||||| ||||| || || Sbjct 1332 GATTGTTCAGCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAG 1391 Query 28602 ACGGAACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTG 28661 || ||||| || || | | || | ||| ||||| || || || ||| | Sbjct 1392 GTTGAGCCTTCGGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATT 1451 Query 28662 CCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATG 28721 || ||||||||| | || || || || || || |||||||||||| | || || Sbjct 1452 CCGCCTGATCAACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTG 1511 Query 28722 GCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 || || ||||| ||||| ||||| ||||| |||| Sbjct 1512 GCTGACTATAATATTCAGAAAGAGTCTACATTGCA 1546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425367647005914