Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7155 183 4e-41 >seq7155 Length=3116674 Score = 183 bits (202), Expect = 4e-41 Identities = 482/730 (66%), Gaps = 19/730 (3%) Strand=Plus/Plus Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||| || |||||||||| ||| | ||||| | | |||||||||||| | || | | Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 || | ||| ||| | | ||||| | ||| || | ||||| || ||||| | | Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 18109 --TACCCTAGATT--TTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAA 18164 ||| || ||| |||| ||| | |||| || || || || | |||| || | Sbjct 2758714 AATACGCTC-ATTACTTGG---TTTTTGTATTAAATG-TTGGAACATCA--AACATGCGA 2758766 Query 18165 AATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCA 18224 | ||| || | || ||||||| || |||| ||| || ||| || || || |||| Sbjct 2758767 AGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCA 2758826 Query 18225 TTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCT 18284 ||| ||| | ||| || ||||| || ||||| || ||||| | | ||||| ||||| | Sbjct 2758827 TTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTT 2758886 Query 18285 CAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATT 18344 ||||| || || || |||| | |||| |||| || | || ||||| Sbjct 2758887 CAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAG 2758946 Query 18345 TTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAA 18403 | ||||| ||| |||| || || || ||||||||||||| || || Sbjct 2758947 CAAGCGCCCAATCTGCCTTGCGCTTTACGGCA-GGCATTGTCTCTATAGCATTGAATAAG 2759005 Query 18404 TCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAA 18463 | || ||| ||| || || || ||||| || || ||||| | ||||||||||||| Sbjct 2759006 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 2759065 Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATC 18523 || | | ||||| || || ||||| | ||| || | | ||||| | ||| | Sbjct 2759066 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 2759125 Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583 || | || | ||| || | ||| ||||| || ||||| |||| | |||||||| Sbjct 2759126 TCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 2759185 Query 18584 GCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATA 18643 || || || | | ||| |||||| ||||||||| ||||| ||| ||||| ||| Sbjct 2759186 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATA 2759245 Query 18644 TCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATT 18703 ||||| || ||||| ||||| || |||||| || |||| ||| ||||| || | Sbjct 2759246 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCTG------CAAT 2759299 Query 18704 TTATAAATAT 18713 ||||||||| Sbjct 2759300 ATATAAATAT 2759309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731806442565600