Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 183 4e-41
>seq7155
Length=3116674
Score = 183 bits (202), Expect = 4e-41
Identities = 482/730 (66%), Gaps = 19/730 (3%)
Strand=Plus/Plus
Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048
||| || |||||||||| ||| | ||||| | | |||||||||||| | || | |
Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653
Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108
|| | ||| ||| | | ||||| | ||| || | ||||| || ||||| | |
Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713
Query 18109 --TACCCTAGATT--TTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAA 18164
||| || ||| |||| ||| | |||| || || || || | |||| || |
Sbjct 2758714 AATACGCTC-ATTACTTGG---TTTTTGTATTAAATG-TTGGAACATCA--AACATGCGA 2758766
Query 18165 AATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCA 18224
| ||| || | || ||||||| || |||| ||| || ||| || || || ||||
Sbjct 2758767 AGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCA 2758826
Query 18225 TTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCT 18284
||| ||| | ||| || ||||| || ||||| || ||||| | | ||||| ||||| |
Sbjct 2758827 TTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTT 2758886
Query 18285 CAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATT 18344
||||| || || || |||| | |||| |||| || | || |||||
Sbjct 2758887 CAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAG 2758946
Query 18345 TTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAA 18403
| ||||| ||| |||| || || || ||||||||||||| || ||
Sbjct 2758947 CAAGCGCCCAATCTGCCTTGCGCTTTACGGCA-GGCATTGTCTCTATAGCATTGAATAAG 2759005
Query 18404 TCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAA 18463
| || ||| ||| || || || ||||| || || ||||| | |||||||||||||
Sbjct 2759006 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 2759065
Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATC 18523
|| | | ||||| || || ||||| | ||| || | | ||||| | ||| |
Sbjct 2759066 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 2759125
Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583
|| | || | ||| || | ||| ||||| || ||||| |||| | ||||||||
Sbjct 2759126 TCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 2759185
Query 18584 GCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATA 18643
|| || || | | ||| |||||| ||||||||| ||||| ||| ||||| |||
Sbjct 2759186 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATA 2759245
Query 18644 TCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATT 18703
||||| || ||||| ||||| || |||||| || |||| ||| ||||| || |
Sbjct 2759246 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCTG------CAAT 2759299
Query 18704 TTATAAATAT 18713
|||||||||
Sbjct 2759300 ATATAAATAT 2759309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731806442565600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |