Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7155 217 3e-51 seq3141 158 2e-33 seq7156 141 2e-28 seq7104 141 2e-28 >seq7155 Length=3116674 Score = 217 bits (240), Expect = 3e-51 Identities = 469/702 (67%), Gaps = 13/702 (2%) Strand=Plus/Plus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 ||| || |||||||| | ||| | ||||||| || ||||||||||| | ||| || | Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774 || || || ||| | ||||| | || |||| ||||||| |||||| || Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 49775 tata---ttattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831 ||| | ||| ||| | ||| |||| ||| | | | | || |||||||| || Sbjct 2758714 AATACGCTCATTACTTGGTT-TTTGTATTAAATGTT----GGA-ACATCAAACATGCGAA 2758767 Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891 ||| ||| | ||||| || | || || | |||||| ||| || || |||||||| Sbjct 2758768 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 2758827 Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951 ||| || | || |||||||| || || || |||||||| | | ||||| ||||| || Sbjct 2758828 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTC 2758887 Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--ATATCCAA 50009 || |||||||| |||| | | | ||||| || | | | || | | |||||| Sbjct 2758888 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCTGA-CTTCGAGGAAATCCAA 2758945 Query 50010 TTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 50069 | ||||||||||| || || | | ||| || | |||||||| || ||||| Sbjct 2758946 GCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 2759005 Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAA 50129 | ||| ||| | ||||||| ||||||||||||| Sbjct 2759006 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 2759065 Query 50130 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACT 50189 || ||| ||||| || ||||||||| ||| || | ||| |||| || ||| Sbjct 2759066 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 2759125 Query 50190 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 50249 || |||| |||||||||| ||| ||| ||||||||||||||||| ||||| || Sbjct 2759126 TCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 2759185 Query 50250 GCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 50309 ||||| |||| | |||||||||| ||||||||| | | | | ||||| || | | Sbjct 2759186 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATA 2759245 Query 50310 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 || || || | ||||||||| |||| |||||| || |||||| Sbjct 2759246 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCT 2759287 >seq3141 Length=2848 Score = 158 bits (174), Expect = 2e-33 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||||||||| | ||||||||| || |||| |||||| |||||||| |||| Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| |||||||| || || || || |||| | |||||||||||| || Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGAATCTGACGATTCTA 192487 |||||||| |||||||| ||||| || |||| ||| |||| ||| || | || | Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 1393 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || ||||| ||||| ||||| || | ||||| | || || |||||| Sbjct 1392 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343 >seq7156 Length=3407544 Score = 141 bits (156), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| | || ||||| | || | ||| || ||| | Sbjct 1526497 GTTCAATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGT 1526556 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| ||||||||||| || || ||||| || | ||||| Sbjct 1526557 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTT 1526616 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || || ||||| ||||| |||||| ||| ||||| || | || | Sbjct 1526617 GATCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAG 1526676 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | | || || |||| || ||||| ||||||||||| ||||| | || |||||||||| Sbjct 1526677 AAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTT 1526736 Query 192539 T 192539 | Sbjct 1526737 T 1526737 >seq7104 Length=1453772 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | |||| ||| || ||| || ||||| Sbjct 422166 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 422107 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || |||| ||||||||| ||||||||||| | |||||||| || Sbjct 422106 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 422047 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || ||| ||| ||||| |||| ||| || | ||| Sbjct 422046 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 421987 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||||| || ||||| || || || | || || |||||||| Sbjct 421986 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984389610584100