Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 217 3e-51
seq3141 158 2e-33
seq7156 141 2e-28
seq7104 141 2e-28
>seq7155
Length=3116674
Score = 217 bits (240), Expect = 3e-51
Identities = 469/702 (67%), Gaps = 13/702 (2%)
Strand=Plus/Plus
Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714
||| || |||||||| | ||| | ||||||| || ||||||||||| | ||| || |
Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653
Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 49774
|| || || ||| | ||||| | || |||| ||||||| |||||| ||
Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713
Query 49775 tata---ttattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831
||| | ||| ||| | ||| |||| ||| | | | | || |||||||| ||
Sbjct 2758714 AATACGCTCATTACTTGGTT-TTTGTATTAAATGTT----GGA-ACATCAAACATGCGAA 2758767
Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891
||| ||| | ||||| || | || || | |||||| ||| || || ||||||||
Sbjct 2758768 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 2758827
Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951
||| || | || |||||||| || || || |||||||| | | ||||| ||||| ||
Sbjct 2758828 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTC 2758887
Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--ATATCCAA 50009
|| |||||||| |||| | | | ||||| || | | | || | | ||||||
Sbjct 2758888 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCTGA-CTTCGAGGAAATCCAA 2758945
Query 50010 TTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 50069
| ||||||||||| || || | | ||| || | |||||||| || |||||
Sbjct 2758946 GCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 2759005
Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAA 50129
| ||| ||| | ||||||| |||||||||||||
Sbjct 2759006 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 2759065
Query 50130 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACT 50189
|| ||| ||||| || ||||||||| ||| || | ||| |||| || |||
Sbjct 2759066 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 2759125
Query 50190 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 50249
|| |||| |||||||||| ||| ||| ||||||||||||||||| ||||| ||
Sbjct 2759126 TCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 2759185
Query 50250 GCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 50309
||||| |||| | |||||||||| ||||||||| | | | | ||||| || | |
Sbjct 2759186 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATA 2759245
Query 50310 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351
|| || || | ||||||||| |||| |||||| || ||||||
Sbjct 2759246 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCT 2759287
>seq3141
Length=2848
Score = 158 bits (174), Expect = 2e-33
Identities = 174/230 (76%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
|||||||||||||| | ||||||||| || |||| |||||| |||||||| ||||
Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
||||| || |||| |||||||| || || || || |||| | |||||||||||| ||
Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGAATCTGACGATTCTA 192487
|||||||| |||||||| ||||| || |||| ||| |||| ||| || | || |
Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 1393
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
| || ||||| ||||| ||||| || | ||||| | || || ||||||
Sbjct 1392 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343
>seq7156
Length=3407544
Score = 141 bits (156), Expect = 2e-28
Identities = 176/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358
||| ||| |||||||| | |||||| | || ||||| | || | ||| || ||| |
Sbjct 1526497 GTTCAATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGT 1526556
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
| || || || || || || |||| ||||||||||| || || ||||| || | |||||
Sbjct 1526557 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTT 1526616
Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478
|||| || || || || ||||| ||||| |||||| ||| ||||| || | || |
Sbjct 1526617 GATCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAG 1526676
Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
| | || || |||| || ||||| ||||||||||| ||||| | || ||||||||||
Sbjct 1526677 AAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTT 1526736
Query 192539 T 192539
|
Sbjct 1526737 T 1526737
>seq7104
Length=1453772
Score = 141 bits (156), Expect = 2e-28
Identities = 171/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || ||||| | |||| ||| || ||| || |||||
Sbjct 422166 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 422107
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || ||| | || |||| ||||||||| ||||||||||| | |||||||| ||
Sbjct 422106 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 422047
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||||||||| ||||| || ||| ||| ||||| |||| ||| || | |||
Sbjct 422046 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 421987
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || ||||| ||||| || ||||| || || || | || || ||||||||
Sbjct 421986 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984389610584100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |