Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq7155 168 1e-36
seq3141 149 1e-30
seq7104 136 7e-27
seq7156 120 5e-22
>seq7155
Length=3116674
Score = 168 bits (186), Expect = 1e-36
Identities = 455/702 (65%), Gaps = 13/702 (2%)
Strand=Plus/Plus
Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016
||| ||||||||||| | ||| | |||||| || ||||||||||| | ||| || |
Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653
Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076
|| || || ||| | ||||| | || |||| ||||||| |||||| ||
Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713
Query 39077 tata---ttattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAA 39133
||| | ||| ||| | ||| |||| ||| | | | | || |||||||| ||
Sbjct 2758714 AATACGCTCATTACTTGGTT-TTTGTATTAAATGT---TGGAACATC--AAACATGCGAA 2758767
Query 39134 ATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 39193
|| ||| | || || || | || || | |||||| ||| || || ||||||||
Sbjct 2758768 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 2758827
Query 39194 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 39253
||| || | || |||||||| || || || |||||||| | | ||||| ||||| ||
Sbjct 2758828 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTC 2758887
Query 39254 CACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--AAATCCAA 39311
|| |||||||| |||| | | | ||||| || | | | || | ||||||||
Sbjct 2758888 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCTGA-CTTCGAGGAAATCCAA 2758945
Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 39371
| ||||||||||| || || | | ||| || | |||||||| || |||||
Sbjct 2758946 GCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 2759005
Query 39372 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAA 39431
| || |||||||||||||
Sbjct 2759006 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 2759065
Query 39432 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACT 39491
|| ||| ||||| || ||||||||| ||| || | ||| |||| || |||
Sbjct 2759066 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 2759125
Query 39492 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 39551
|| |||| |||||||||| ||| ||| ||||||||||||||||| ||||| ||
Sbjct 2759126 TCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 2759185
Query 39552 GCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 39611
||||| || | | |||||||||| ||||||||| | | | | ||||| || | |
Sbjct 2759186 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATA 2759245
Query 39612 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653
|| || || | ||||||||| |||| |||||| || ||||||
Sbjct 2759246 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCT 2759287
>seq3141
Length=2848
Score = 149 bits (164), Expect = 1e-30
Identities = 172/230 (75%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
||||||||||| || | ||||||||| || |||| |||||| ||||||||| || |
Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|| | || | || |||||||| || || || ||||||| | |||||| ||||| ||
Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGTATCTGACGATTCTA 172020
|||||||| |||||||| ||||| || |||| ||| |||||||| || | || |
Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 1393
Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070
| || ||||| ||||| ||||| || | ||||| | ||| || ||||||
Sbjct 1392 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343
>seq7104
Length=1453772
Score = 136 bits (150), Expect = 7e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || ||||| | |||| ||| || || || |||||
Sbjct 422166 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 422107
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || ||| |||| |||| ||||||||| ||||| ||||| | ||||| || ||
Sbjct 422106 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 422047
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| || ||| ||| ||||| |||||||| || | |||
Sbjct 422046 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 421987
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072
|| || ||||| ||||| || ||||| || || || | ||| || ||||||||
Sbjct 421986 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934
>seq7156
Length=3407544
Score = 120 bits (132), Expect = 5e-22
Identities = 168/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| |||||||| | ||| || | || ||||| | || | ||| || || || ||
Sbjct 1526502 ATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAG 1526561
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || || | || | || ||||||||||| || || || || || | |||||| ||
Sbjct 1526562 TCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCT 1526621
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
|| || || || ||||| ||||| |||||| ||| ||||| || || || || |
Sbjct 1526622 GGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGC 1526681
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072
|| || |||| || ||||| ||||||||||| ||||| | ||| |||||||||||
Sbjct 1526682 TCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905054922442800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |