Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7155 168 1e-36 seq3141 149 1e-30 seq7104 136 7e-27 seq7156 120 5e-22 >seq7155 Length=3116674 Score = 168 bits (186), Expect = 1e-36 Identities = 455/702 (65%), Gaps = 13/702 (2%) Strand=Plus/Plus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||| ||||||||||| | ||| | |||||| || ||||||||||| | ||| || | Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataat 39076 || || || ||| | ||||| | || |||| ||||||| |||||| || Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 39077 tata---ttattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAA 39133 ||| | ||| ||| | ||| |||| ||| | | | | || |||||||| || Sbjct 2758714 AATACGCTCATTACTTGGTT-TTTGTATTAAATGT---TGGAACATC--AAACATGCGAA 2758767 Query 39134 ATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 39193 || ||| | || || || | || || | |||||| ||| || || |||||||| Sbjct 2758768 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 2758827 Query 39194 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 39253 ||| || | || |||||||| || || || |||||||| | | ||||| ||||| || Sbjct 2758828 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTC 2758887 Query 39254 CACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--AAATCCAA 39311 || |||||||| |||| | | | ||||| || | | | || | |||||||| Sbjct 2758888 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCTGA-CTTCGAGGAAATCCAA 2758945 Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 39371 | ||||||||||| || || | | ||| || | |||||||| || ||||| Sbjct 2758946 GCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 2759005 Query 39372 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAA 39431 | || ||||||||||||| Sbjct 2759006 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 2759065 Query 39432 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACT 39491 || ||| ||||| || ||||||||| ||| || | ||| |||| || ||| Sbjct 2759066 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 2759125 Query 39492 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 39551 || |||| |||||||||| ||| ||| ||||||||||||||||| ||||| || Sbjct 2759126 TCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 2759185 Query 39552 GCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 39611 ||||| || | | |||||||||| ||||||||| | | | | ||||| || | | Sbjct 2759186 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATA 2759245 Query 39612 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 || || || | ||||||||| |||| |||||| || |||||| Sbjct 2759246 TCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCT 2759287 >seq3141 Length=2848 Score = 149 bits (164), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||||||| || | ||||||||| || |||| |||||| ||||||||| || | Sbjct 1570 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1511 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || || || ||||||| | |||||| ||||| || Sbjct 1510 AATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGA 1451 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGTATCTGACGATTCTA 172020 |||||||| |||||||| ||||| || |||| ||| |||||||| || | || | Sbjct 1450 ATTCCTTCCTTATCTTGAATTTTGGACTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 1393 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070 | || ||||| ||||| ||||| || | ||||| | ||| || |||||| Sbjct 1392 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 1343 >seq7104 Length=1453772 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | |||| ||| || || || ||||| Sbjct 422166 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 422107 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| |||| ||||||||| ||||| ||||| | ||||| || || Sbjct 422106 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 422047 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| ||| ||||| |||||||| || | ||| Sbjct 422046 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 421987 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || || ||||| ||||| || ||||| || || || | ||| || |||||||| Sbjct 421986 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934 >seq7156 Length=3407544 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || ||||| | || | ||| || || || || Sbjct 1526502 ATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAG 1526561 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || ||||||||||| || || || || || | |||||| || Sbjct 1526562 TCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCT 1526621 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || ||||| ||||| |||||| ||| ||||| || || || || | Sbjct 1526622 GGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGC 1526681 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || || |||| || ||||| ||||||||||| ||||| | ||| ||||||||||| Sbjct 1526682 TCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905054922442800