Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq7098 159 1e-33 seq7123 120 9e-22 seq7089 118 3e-21 seq7084 118 3e-21 seq7155 114 4e-20 seq7091 96.9 1e-14 seq7108 93.3 1e-13 >seq7098 Length=1532034 Score = 159 bits (176), Expect = 1e-33 Identities = 211/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||||||||| ||||| || ||||| ||| | ||||| || |||||||| || || Sbjct 715534 TTGATTAAACGCCGCTGTATGTAACCCGTTTCTGCAGTTTTCACGGCTGTATCGATAAGC 715475 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||| || ||||| ||||||||| | | ||| ||| ||| ||| | | | Sbjct 715474 CCTTCACGTCCGCCCATTGCATGGAAGTAGAACTCACTTGGTGTTAGGCCCGCTAGGTAT 715415 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 || |||| ||||| || |||||||| ||| || ||| |||| |||||||||||| Sbjct 715414 GAATTCTCGACGAAGCCGCGCGCCTCTGGCCCATAATCGTCCTTGATAAAGTGTGGCATT 715355 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 || | || | | ||||| || ||||| || || |||||||||||||| || | ||| Sbjct 715354 GTACGTTTACGAAAACCGTAAGGTATACGTTTACCTTCAACGTTCTGCTGGCCAACGCAG 715295 Query 302824 GAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| || || || || | || | |||||||| ||||| ||||||| Sbjct 715294 GCAATCACTTGTGATATGTTAATATTAGAACCCTTGGAACCAGCGATTACCAT 715242 Score = 89.7 bits (98), Expect = 2e-12 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 ||| || |||| ||| ||||||||||||||| ||||| | ||| |||||||||||| Sbjct 701687 AGCTCCATGAGATATCTGACAATCACGTTCCATCTCACCGAAACGTAGACCACCATCACG 701628 Query 233332 TGACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 || |||||||| | | |||||| | | ||| | || | ||||| | |||||| | | Sbjct 701627 TGCCCTACCCTCCATAGGTTGACGCACTAAAATCTGTAC-GGGACCACGTGCACGAGAGT 701569 Query 233391 TAATTTTATCTTTAACCATATGCTTCAG 233418 |||||| || | ||||| ||||| || Sbjct 701568 GAATTTTGTCATCCACCATGTGCTTGAG 701541 >seq7123 Length=2106496 Score = 120 bits (132), Expect = 9e-22 Identities = 188/269 (70%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||| ||||||||||||||| || || || ||||| ||| Sbjct 1373729 TCCATAGCCTTTATGAGACGACGTTGAATATAACCAGTTTCAGCAGTCTTGACAGCAGTA 1373670 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| || ||| | | || ||| || || Sbjct 1373669 TCGATAAGACCTTCACGACCACCCATAGCGTGAAAGTAGAATTCCGAAGGTGTTAAGCCG 1373610 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | | || |||| ||||| ||||||| ||| || || ||| || | || Sbjct 1373609 GCAAGATATGAATTCTCCACGAAGCCACGCGACTCAGGACCATAATCGTCTTTAATGAAA 1373550 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || |||| || | || | | ||||| || ||||| || || || |||||||| || Sbjct 1373549 TGCGGCAATGTGCGTTTACGAAAACCGTACGGTATACGTTTACCCTCGACGTTCTGTTGA 1373490 Query 302815 CCCAGGCACGAAATCATCTGCGAAATATT 302843 |||| ||| | ||| | ||| || || || Sbjct 1373489 CCCACGCAAGCAATAACCTGTGAGATGTT 1373461 >seq7089 Length=1398194 Score = 118 bits (130), Expect = 3e-21 Identities = 227/333 (68%), Gaps = 4/333 (1%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| ||||| || | | ||| || | || | ||| || |||| | Sbjct 1024659 CCAACCGCATCAATTTCATCAATAAACAAAATACATGGTGCATGCTTTCTAGCCATTGAA 1024718 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| ||||| || | || | ||||||| |||| || | ||| || ||| || Sbjct 1024719 AACATATCTCGAACACGTGACGGACCTACACCAACAAACATCTCCAAAAACTCGGAACCG 1024778 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| || || | ||||||||||| || || |||| | || | | ||| || Sbjct 1024779 GATACGCTTATAAAAGGAACATTTGCTTCACCAGCGGTTGCCTTTGCTAATAATGTTTTT 1024838 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 ||||| |||||||| || | | | | || ||||| | |||||| || | || Sbjct 1024839 CCTGTACCAGGTGGACCTGTGAGCATAGCACCTTTTGGAATTTTTGCGCCGAGATCAATA 1024898 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| | ||| | ||||| || | |||| |||| || ||| ||| || || ||| Sbjct 1024899 TATTGTTGAGGATTTTTTAAGAAGTTCACAAATTCCATAATTTCGATTTTGGCTTCCTCA 1024958 Query 289330 CATCCTGCTACAT--CAGCAAAA--GTAATATT 289358 || || || |||| | |||||| | |||||| Sbjct 1024959 CAACCCGCAACATCCCTGCAAAATTGCAATATT 1024991 >seq7084 Length=1258986 Score = 118 bits (130), Expect = 3e-21 Identities = 572/894 (64%), Gaps = 17/894 (2%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| ||||| || || | ||| || ||| || ||||| | ||||| || ||| Sbjct 2265 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTA 2324 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || | ||||||||||| || || | |||||||| || || ||||||| || | Sbjct 2325 CTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGAT 2384 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | ||| | | ||| || | || || |||| ||| ||| | |||||| Sbjct 2385 TCAATAATGCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGT 2444 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870 |||||||||| ||| | | || | | || ||||| | ||| | || || ||| Sbjct 2445 TCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACAC 2504 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCA 155930 || | || || | |||||||| || || | |||||| | |||||||| |||| Sbjct 2505 TTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCA 2564 Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCT 155988 ||| | |||||||| | || || || | || ||| || | || ||| || | Sbjct 2565 GGTATCCACAAGGCATAGAACAAATCTCTGGCACGATG-CTCTTCTTTACCAGTG-TTTT 2622 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAAC 156048 || | || || ||||| |||||||| ||| ||| || || || || ||||| Sbjct 2623 TCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAAGG 2682 Query 156049 TACCATTCCTCTTGC--CACCC-TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 || || || | ||||| ||||| ||||| || || | |||||||| || | | Sbjct 2683 CGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCA 2742 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGC-GAACCAGATGAG 156164 |||||| | | |||||| || ||| ||| || || || | ||| | || || | Sbjct 2743 ACATAGGCACCAAACCATTTGATTTGCTATTTGTACC-CGCAATTGCAGTGCCTTTTGCG 2801 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 || | ||| | | || |||||||| || | |||| ||||| || |||| Sbjct 2802 CGTATGCAATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGA 2861 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 | | ||| |||||||||| ||||| ||||| || |||| | |||||| |||| || Sbjct 2862 TGTGCAGATGTGAAAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGAT 2921 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 ||||| || | || |||| ||| || || || | ||||| ||||||| Sbjct 2922 GACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAA 2981 Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTC-TCAAGATTAGACCCGTGAATACA 156403 | || | | | ||| || || | || | || | | || || |||| Sbjct 2982 CGTTCGGAAAGCAAGTTGTAAGTTTCGAT-TGCTGCATCGATGTCTTCGCCATGTATACC 3040 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCA-TCAA--TTCG 156460 ||| | || | ||| |||||||||| || ||||| ||||| ||| |||| || | Sbjct 3041 GATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACTTTAG 3100 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 || | || | ||||| || |||||||| || ||||||| | | |||||| Sbjct 3101 CAAA---TAGGAACGTTCAAGTGTTTTAAAACCAAAATAATTATAACCAAAATC 3151 >seq7155 Length=3116674 Score = 114 bits (126), Expect = 4e-20 Identities = 444/682 (65%), Gaps = 22/682 (3%) Strand=Plus/Minus Query 133154 GAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACAT 133213 ||||||||| | || ||||| | | |||| | || |||| ||||| |||| Sbjct 2759265 GAAGTAGATCTTTCTAAAGATATGGATGATTGGGCACGTCTCACTGATAATGAACGACAT 2759206 Query 133214 TTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTA 133273 |||||||| | ||||| ||||| || || |||||||||||| ||||||| || Sbjct 2759205 TTTATTTCACACGTGTTAGCCTTTTTCGCCGCATCTGATGGTATTGTGAATGAAAATGTA 2759146 Query 133274 G--GAACACGGTTTATGGGA-GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTA 133330 | |||| |||| || | ||||| ||| || | || || ||| ||| ||||| | Sbjct 2759145 GTTGAAC---GTTTCTGCCAGGAAGTCCAAGTGACAGAGGCACGTTGCTTCTATGGATTT 2759089 Query 133331 CAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATC 133390 || ||||||||||| ||| | |||||| | ||| | |||||||||| || || Sbjct 2759088 CAAATTGCGATGGAGAATGTGCATTCTGAAATGTATAGCATATTAATTGATACATATATT 2759029 Query 133391 AAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAA 133450 || || | || | | | | ||||||| || | ||| || | | || |||| Sbjct 2759028 AAGGACTCGAAACAAAGGAATTACTTATTCAATGCTA-TAGAGACAATGCCTGCCGTAAA 2758970 Query 133451 AAG-AAATCTGACTGGGCTATTAAATGGA--TCCAGGACAAGCGTGCGAGTTTTGCTACT 133507 | || | || ||||| || |||| ||| | ||| || | |||| | Sbjct 2758969 GCGCAAGGCAGATTGGGCGCTTGCTTGGATTTCCTCG--AAGTCAGCCAACTTTGGTGAA 2758912 Query 133508 CGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTAT 133566 ||| | |||| ||||||| || || || || || |||||||| ||| ||| || || Sbjct 2758911 CGTGTAATTGCATTTGCTGCCGTTGAAGGTATCTTCTTCAGTGG-CAGTTTTGCTTCGAT 2758853 Query 133567 TTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTC 133626 || |||||||| || |||||| | | || || || ||||| || ||||| ||||| Sbjct 2758852 CTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTGACATTTTCCAATGAACTAATTTC 2758793 Query 133627 AAGGGACGAGGCACTTCACACCGAATTTGC-CGTTTTA-CTTC--ACTCTAAATTAGAGC 133682 | | || |||| |||||| || || || |||| | ||| || | || || | Sbjct 2758792 ACGAGATGAGGGACTTCATTGTGACTTCGCATGTTTGATGTTCCAACATTTAA-TACAAA 2758734 Query 133683 GACCACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTGAGGTTG 133742 |||| || || | |||| ||||| ||| ||||| ||| |||||||| | Sbjct 2758733 AACCAAGTAATGAGCGT---ATTGTTGAAATAATTTCTGAAGCTGTTAAAATTGAGCAGG 2758677 Query 133743 AATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTATGAATGATGTGCTGATGCAGC 133802 |||| | | | ||| ||||| |||||| ||||||||| || ||| Sbjct 2758676 AATTCTTAACTGACGCTTTGCCGGTGAATTTAATCGGTATGAATTGCAAACTAATGTCCG 2758617 Query 133803 GTTATATTGAATTTGTAGCTGA 133824 |||||| |||||||| ||||| Sbjct 2758616 ATTATATCGAATTTGTGGCTGA 2758595 >seq7091 Length=1539067 Score = 96.9 bits (106), Expect = 1e-14 Identities = 193/283 (68%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| || | |||||| |||||| | ||||| | ||| ||||||||| | | Sbjct 556846 AAATAGATCGCGTACACGTCTTGCTCCCTGGCCAACGAGTACTTCATCAAATTCAGGACC 556787 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | || | ||||| || ||||| ||||| || || || | || || ||||| || Sbjct 556786 AGCAGCATGGAAGAATGGAACGTTTGCCTCGCCAGCCACCGCACGGGCAAGTAGTGTTTT 556727 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || ||||| ||||| ||||||| || || ||||| | ||| |||| || | | Sbjct 556726 GCCAGTACCAGGAGGTCCAACTAATAGCACACCTTTTGGCAATTTACCCCC--CAAATTG 556669 Query 289269 --ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | | || ||||| || || | |||||| || | || | | || | ||| || ||| Sbjct 556668 GAAAACTTTTCAGGACTTTTAAGAAATTCCACGACCTCTTTTAACTCTTGTTTCGCTTCA 556609 Query 289327 TCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 |||||||| |||||| |||| || | || ||| || |||| Sbjct 556608 TCACATCCCTTAACATCATCAAATGTCACATGAATTTC-TTCT 556567 >seq7108 Length=2013453 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | | ||||| ||||| || ||||||||||| | ||||| ||||| || | Sbjct 1406113 GCACCATATGAAATCAAGCAATCGCGCTCCATTTCACCCAAACGCAAGCCACCTTC--TC 1406170 Query 233333 GAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | |||||| | |||||| |||| || | | ||||||| | ||||| || Sbjct 1406171 GACTGCGACCCTGCGTGGGTTGACGCGTTAGCACCGCTTTTGGACCGCGTGCACGTGCAT 1406230 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACC 233439 |||||||||| ||||||||||||||| || |||||| |||||| Sbjct 1406231 GCATTTTATCTTGCACCATATGCTTCAGTTTCTGATAATACACCGGACC 1406279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471682465986942