Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq7156 156 3e-33
seq7104 132 4e-26
>seq7156
Length=3407544
Score = 156 bits (172), Expect = 3e-33
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
|||||| |||||||| || || || || ||||| ||||| || || | | |||||||
Sbjct 1526519 ACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 1526578
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | |||||| || || | ||||| | || ||||| || || |||||||||||
Sbjct 1526579 ATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTT 1526638
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | ||| ||||||| |||| | ||||||||| | || || || | || ||
Sbjct 1526639 GTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGAT 1526698
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || |||||||||||||| || || |||||||||||
Sbjct 1526699 GGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737
>seq7104
Length=1453772
Score = 132 bits (146), Expect = 4e-26
Identities = 163/220 (74%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || ||||||||||| || || || || || ||||| ||||| | | |||||
Sbjct 422152 ACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCC 422093
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
|| || |||||||| || ||| | || || | ||| ||||| || || || || |||||
Sbjct 422092 GTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTT 422033
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| || | ||| ||| |||| | ||| || || |||| || || ||||| |
Sbjct 422032 GTCTTG-AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGA 421974
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || |||||||| ||||| || || || || ||||||||
Sbjct 421973 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934
Score = 118 bits (130), Expect = 8e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628
|| || || || ||||| || |||||||| || ||||| ||||| || | | |||||
Sbjct 422382 AAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGT 422323
Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688
||| || | ||||||||||| | ||||| | ||| ||||| || || || || ||
Sbjct 422322 CCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCC 422263
Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747
|| ||||| |||||| | ||||||| | || | || || ||| | || || || | |||
Sbjct 422262 TTATCTTG-AATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGT 422204
Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || || || ||||| || || ||||||||
Sbjct 422203 GATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385185556640406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |