Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7156 156 3e-33 seq7104 132 4e-26 >seq7156 Length=3407544 Score = 156 bits (172), Expect = 3e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| |||||||| || || || || ||||| ||||| || || | | ||||||| Sbjct 1526519 ACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 1526578 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || || | ||||| | || ||||| || || ||||||||||| Sbjct 1526579 ATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTT 1526638 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||||||| |||| | ||||||||| | || || || | || || Sbjct 1526639 GTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGAT 1526698 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || |||||||||||||| || || ||||||||||| Sbjct 1526699 GGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737 >seq7104 Length=1453772 Score = 132 bits (146), Expect = 4e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| || || || || || ||||| ||||| | | ||||| Sbjct 422152 ACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCC 422093 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || |||||||| || ||| | || || | ||| ||||| || || || || ||||| Sbjct 422092 GTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTT 422033 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||| ||| |||| | ||| || || |||| || || ||||| | Sbjct 422032 GTCTTG-AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGA 421974 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || |||||||| ||||| || || || || |||||||| Sbjct 421973 TGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || || || || ||||| || |||||||| || ||||| ||||| || | | ||||| Sbjct 422382 AAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGT 422323 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||||||||||| | ||||| | ||| ||||| || || || || || Sbjct 422322 CCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCC 422263 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || ||||| |||||| | ||||||| | || | || || ||| | || || || | ||| Sbjct 422262 TTATCTTG-AATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGT 422204 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || || ||||| || || |||||||| Sbjct 422203 GATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385185556640406