Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq7084 210 5e-49
seq7123 87.8 4e-12
seq7098 87.8 4e-12
seq7163 84.2 5e-11
>seq7084
Length=1258986
Score = 210 bits (232), Expect = 5e-49
Identities = 578/872 (66%), Gaps = 39/872 (4%)
Strand=Plus/Minus
Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363
||||||||||| ||||| ||||||||| | ||||| || | |||||| | || ||
Sbjct 3136 TATTTTGGTTTTAAAACACTTGAACGTTCCTATTTGCTAAAGTTGAATGGCAAAATTGTT 3077
Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423
|| || || || || ||||| | |||||||| || ||||| ||||| | || || |
Sbjct 3076 GAGCGACCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATCGAT 3017
Query 110424 GCTGTTATTGAATGTTATGA--TGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476
|| | || ||| ||| | || || | || | |||| |||||| |
Sbjct 3016 GCAGCAATCGAAACTTACAACTTGCTTTCCG-------AACGTTATTTTACACATGCTTC 2964
Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTTTCTTCTAG 110535
||| || || || || | ||||| | || |||||| | || |||||||| ||
Sbjct 2963 TCCAACGCTTTTCGCTGCTGCCACTAA-GCAGCCGCAATTGTCATCATGCTTTCTACTGA 2905
Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGA----TGCTCTTAAAGAAACTGCTCTT 110591
|| || ||||| ||||| ||||||| | | ||| | | || ||| |
Sbjct 2904 CCATGGTGGACGATTCCATTGATGGTATTT-TCACATCTGCACATCAATG---TGCATTG 2849
Query 110592 ATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA--- 110648
||||| ||| |||| || |||||| | |||| ||| || ||| |||||||
Sbjct 2848 ATTTCCAAATCTGCTGGCGGTATTGGTCTGAACGTACATTGCATACGCGCAAAAGGCACT 2789
Query 110649 GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTC 110708
|||| | | ||| || | |||| ||| | || || ||||| |||| |||
Sbjct 2788 GCAATTGCGGGTACA---AATAGCAAATCAAATGGTTTGGTGCCTATGTTGCGAGTGTTC 2732
Query 110709 AACGACACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGGCTCATTTGCTATC 110765
|| | | ||| |||||| ||||||| ||||| | ||| | ||||| |||
Sbjct 2731 AATAATATAGCACGCTATGTGGATCAAGGGTGCGGTAAACGGCCCGGCGCCTTTGCCATC 2672
Query 110766 TATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AAAATCAAGG 110824
|| |||||||| |||||| | ||||| || ||||| || || || | | |||| || |
Sbjct 2671 TACCTCGAACCATGGCATGCTGATATTTTCGAATTTTTGGA--TTTGAAGAAAAACACTG 2614
Query 110825 ATTT-GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883
| ||||| || | || | ||||| || ||||| ||||||| | ||| |||| |
Sbjct 2613 GTAAAGAAGAGCATCGTGCCAGAGATTTGTTCTATGCCTTGTGGATACCTGATCTATTTA 2554
Query 110884 TGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTC 110943
|||||||||| ||| ||| ||||| || |||||||| || | ||| |||
Sbjct 2553 TGAAACGTGTAGAAGCCGATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTT 2494
Query 110944 TATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA 111003
|| ||| |||| || ||||||| ||| | | || ||||||||| | ||||| |
Sbjct 2493 TACATGAAGTATGGGGTGAAGAGTTCGAAAAGTTATATCTGAAATATGAACAGGAAGG-A 2435
Query 111004 AGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTT 111062
|| | || ||| | | || ||| |||||||| | || ||||||| |||||
Sbjct 2434 CGTGCCAATAAGAAAATAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCAAGTG 2375
Query 111063 GAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATG 111122
|| || || || || || || |||||||||||| | |||||| || ||||||| |
Sbjct 2374 GAGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAG 2315
Query 111123 AATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154
||| | || |||||||||| ||||||||| ||
Sbjct 2314 AATGTTGGCACAATTAAGTGTAGTAATTTATG 2283
>seq7123
Length=2106496
Score = 87.8 bits (96), Expect = 4e-12
Identities = 133/185 (72%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365
|||||||| ||| ||||| |||| | |||||| | || ||| | || || ||||||
Sbjct 1372342 AGACATTTACGCGACGATGATCTGGTTATTTTCAATCGTCAGCCAACGCTACACAAAATG 1372401
Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCG-ATTAA-ATGT-A 305422
|||||||| ||| ||||||||||| || | | ||||| || || || |||
Sbjct 1372402 AGTATGATGGGGCATCGTGTCAAAGTATTGCCTTGGTCTACATTCCGTATGAACCTGTCC 1372461
Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482
|| ||| | ||||| || || ||||| || |||||||||||||| |||| || ||
Sbjct 1372462 TGTACTT---CACCTTACAACGCTGATTTCGACGGAGATGAAATGAACTTGCACGTGCCA 1372518
Query 305483 CAATC 305487
|||||
Sbjct 1372519 CAATC 1372523
>seq7098
Length=1532034
Score = 87.8 bits (96), Expect = 4e-12
Identities = 122/170 (72%), Gaps = 6/170 (4%)
Strand=Plus/Plus
Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377
|| ||||||| ||| | ||||| | |||||| | |||| |||||||| ||||||| |
Sbjct 712898 GATAATGATTTGGTGATCTTCAACCGCCAACCAACGTTGCACAAAATGTCGATGATGGGT 712957
Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTAC---G 305434
|| ||||||||| | || | | ||||| | | || | ||||||| |
Sbjct 712958 CACCGCGTCAAAGTACTGCCTTGGTCCACATTCAGGATGAACCTCT---CTTGTACCTCG 713014
Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484
|| ||||| || ||||| ||||| |||||||||||| | ||||| |||||
Sbjct 713015 CCCTATAACGCAGATTTCGATGGCGATGAAATGAATTTACATGTTCCTCA 713064
>seq7163
Length=5850278
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
|| || |||||| | ||||||||||| ||||||||||| || ||| ||| ||| ||
Sbjct 5087336 GTGCTCTTCAATCGCCAACCATCACTACATAAAATGTCGATTATGTGTCACCAAGCTAAG 5087277
Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449
|| | | ||||| || || || | ||||||||||||| ||||| || |||
Sbjct 5087276 GTGCAGCCACAACGTACATTCCGTTTCAACGAGTGTGCTTGTACGCCATATAACGCAGAT 5087217
Query 305450 TTTGATGGAGATGAAATGAAT 305470
|| || || ||||||||||||
Sbjct 5087216 TTCGACGGCGATGAAATGAAT 5087196
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186703833524526
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |