Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7084 210 5e-49 seq7123 87.8 4e-12 seq7098 87.8 4e-12 seq7163 84.2 5e-11 >seq7084 Length=1258986 Score = 210 bits (232), Expect = 5e-49 Identities = 578/872 (66%), Gaps = 39/872 (4%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| ||||| ||||||||| | ||||| || | |||||| | || || Sbjct 3136 TATTTTGGTTTTAAAACACTTGAACGTTCCTATTTGCTAAAGTTGAATGGCAAAATTGTT 3077 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || || || || || ||||| | |||||||| || ||||| ||||| | || || | Sbjct 3076 GAGCGACCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATCGAT 3017 Query 110424 GCTGTTATTGAATGTTATGA--TGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476 || | || ||| ||| | || || | || | |||| |||||| | Sbjct 3016 GCAGCAATCGAAACTTACAACTTGCTTTCCG-------AACGTTATTTTACACATGCTTC 2964 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTTTCTTCTAG 110535 ||| || || || || | ||||| | || |||||| | || |||||||| || Sbjct 2963 TCCAACGCTTTTCGCTGCTGCCACTAA-GCAGCCGCAATTGTCATCATGCTTTCTACTGA 2905 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGA----TGCTCTTAAAGAAACTGCTCTT 110591 || || ||||| ||||| ||||||| | | ||| | | || ||| | Sbjct 2904 CCATGGTGGACGATTCCATTGATGGTATTT-TCACATCTGCACATCAATG---TGCATTG 2849 Query 110592 ATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA--- 110648 ||||| ||| |||| || |||||| | |||| ||| || ||| ||||||| Sbjct 2848 ATTTCCAAATCTGCTGGCGGTATTGGTCTGAACGTACATTGCATACGCGCAAAAGGCACT 2789 Query 110649 GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTC 110708 |||| | | ||| || | |||| ||| | || || ||||| |||| ||| Sbjct 2788 GCAATTGCGGGTACA---AATAGCAAATCAAATGGTTTGGTGCCTATGTTGCGAGTGTTC 2732 Query 110709 AACGACACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGGCTCATTTGCTATC 110765 || | | ||| |||||| ||||||| ||||| | ||| | ||||| ||| Sbjct 2731 AATAATATAGCACGCTATGTGGATCAAGGGTGCGGTAAACGGCCCGGCGCCTTTGCCATC 2672 Query 110766 TATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTA-AAAATCAAGG 110824 || |||||||| |||||| | ||||| || ||||| || || || | | |||| || | Sbjct 2671 TACCTCGAACCATGGCATGCTGATATTTTCGAATTTTTGGA--TTTGAAGAAAAACACTG 2614 Query 110825 ATTT-GAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCA 110883 | ||||| || | || | ||||| || ||||| ||||||| | ||| |||| | Sbjct 2613 GTAAAGAAGAGCATCGTGCCAGAGATTTGTTCTATGCCTTGTGGATACCTGATCTATTTA 2554 Query 110884 TGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTC 110943 |||||||||| ||| ||| ||||| || |||||||| || | ||| ||| Sbjct 2553 TGAAACGTGTAGAAGCCGATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTT 2494 Query 110944 TATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCA 111003 || ||| |||| || ||||||| ||| | | || ||||||||| | ||||| | Sbjct 2493 TACATGAAGTATGGGGTGAAGAGTTCGAAAAGTTATATCTGAAATATGAACAGGAAGG-A 2435 Query 111004 AGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTT 111062 || | || ||| | | || ||| |||||||| | || ||||||| ||||| Sbjct 2434 CGTGCCAATAAGAAAATAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCAAGTG 2375 Query 111063 GAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATG 111122 || || || || || || || |||||||||||| | |||||| || ||||||| | Sbjct 2374 GAGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAG 2315 Query 111123 AATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||| | || |||||||||| ||||||||| || Sbjct 2314 AATGTTGGCACAATTAAGTGTAGTAATTTATG 2283 >seq7123 Length=2106496 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| ||| ||||| |||| | |||||| | || ||| | || || |||||| Sbjct 1372342 AGACATTTACGCGACGATGATCTGGTTATTTTCAATCGTCAGCCAACGCTACACAAAATG 1372401 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCG-ATTAA-ATGT-A 305422 |||||||| ||| ||||||||||| || | | ||||| || || || ||| Sbjct 1372402 AGTATGATGGGGCATCGTGTCAAAGTATTGCCTTGGTCTACATTCCGTATGAACCTGTCC 1372461 Query 305423 AGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || ||| | ||||| || || ||||| || |||||||||||||| |||| || || Sbjct 1372462 TGTACTT---CACCTTACAACGCTGATTTCGACGGAGATGAAATGAACTTGCACGTGCCA 1372518 Query 305483 CAATC 305487 ||||| Sbjct 1372519 CAATC 1372523 >seq7098 Length=1532034 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || ||||||| ||| | ||||| | |||||| | |||| |||||||| ||||||| | Sbjct 712898 GATAATGATTTGGTGATCTTCAACCGCCAACCAACGTTGCACAAAATGTCGATGATGGGT 712957 Query 305378 CATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTAC---G 305434 || ||||||||| | || | | ||||| | | || | ||||||| | Sbjct 712958 CACCGCGTCAAAGTACTGCCTTGGTCCACATTCAGGATGAACCTCT---CTTGTACCTCG 713014 Query 305435 CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || ||||| || ||||| ||||| |||||||||||| | ||||| ||||| Sbjct 713015 CCCTATAACGCAGATTTCGATGGCGATGAAATGAATTTACATGTTCCTCA 713064 >seq7163 Length=5850278 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||||||||| ||||||||||| || ||| ||| ||| || Sbjct 5087336 GTGCTCTTCAATCGCCAACCATCACTACATAAAATGTCGATTATGTGTCACCAAGCTAAG 5087277 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | ||||| || || || | ||||||||||||| ||||| || ||| Sbjct 5087276 GTGCAGCCACAACGTACATTCCGTTTCAACGAGTGTGCTTGTACGCCATATAACGCAGAT 5087217 Query 305450 TTTGATGGAGATGAAATGAAT 305470 || || || |||||||||||| Sbjct 5087216 TTCGACGGCGATGAAATGAAT 5087196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186703833524526