Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq7156 102 2e-16
seq7104 102 2e-16
seq3141 98.7 2e-15
>seq7156
Length=3407544
Score = 102 bits (112), Expect = 2e-16
Identities = 165/231 (71%), Gaps = 11/231 (5%)
Strand=Plus/Minus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| || |||||| | || || || || ||||| || || || ||
Sbjct 1526737 AAAATG---CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAG 1526681
Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282
||||||||| ||||| || ||||| ||| || ||||| ||||| || || ||
Sbjct 1526680 CCTTCTGACACCATCGAAAATGTCAAAGCTAAA-ATCCAAGACAAAGAGGGTATCCCCCC 1526622
Query 206283 GGACGCTCAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339
|| |||| || || |||||||||||||| || ||||||||||| | || ||| |
Sbjct 1526621 AGA---TCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTC 1526565
Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||| |||||| |||| || ||||| || || || | ||| || | |||||
Sbjct 1526564 CGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCG 1526514
>seq7104
Length=1453772
Score = 102 bits (112), Expect = 2e-16
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|| || || || |||||| |||| || ||| || || || | ||| || |||||
Sbjct 421961 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 422020
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312
|| ||||||||| ||||||||||| || || ||| | | ||||| ||||| ||
Sbjct 422021 AA-GATTCAAGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 422079
Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|| ||||||| ||| | ||| || ||||||||||| ||||||| |||||||| |||||
Sbjct 422080 ACAACTGGAAGACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 422139
Score = 89.7 bits (98), Expect = 1e-12
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| | || |||||||| ||||||||||| || || ||| ||
Sbjct 422168 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 422227
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
||| | || || ||||| ||| |||||||| || |||||||| || || ||
Sbjct 422228 ACAATTGAGAATGTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCCCCAGATCAACA 422286
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | | || ||||| || || |||||||| |||||| | || || |||| || || |
Sbjct 422287 ACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAATAT 422346
Query 206352 CCAGAAAGAGTCTACTCTTCA 206372
||||| || || ||||| ||
Sbjct 422347 TCAGAAGGAATCCACTCTACA 422367
>seq3141
Length=2848
Score = 98.7 bits (108), Expect = 2e-15
Identities = 131/182 (72%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || |||||| | || || || ||| || || | |||
Sbjct 1359 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCGGATACTATTGAACAT 1418
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || |||||||| || ||||||||| ||| || || | || || |||
Sbjct 1419 GTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCAACAGCGTCTAATTTTC 1478
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||||||||| ||||||||||| | || ||||| || || || | ||||||||||||
Sbjct 1479 GCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAATATTCAGAAAGAGTCT 1538
Query 206365 AC 206366
||
Sbjct 1539 AC 1540
Score = 93.3 bits (102), Expect = 1e-13
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835
|||||||||||||| | ||||||||||||||| || | |||||||||| |||||||||
Sbjct 1540 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1481
Query 204836 GCGAAGATAAGCCGTTGTTGA 204856
||||| || || || ||||||
Sbjct 1480 GCGAAAATTAGACGCTGTTGA 1460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181712291861886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |