Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7156 102 2e-16 seq7104 102 2e-16 seq3141 98.7 2e-15 >seq7156 Length=3407544 Score = 102 bits (112), Expect = 2e-16 Identities = 165/231 (71%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || |||||| | || || || || ||||| || || || || Sbjct 1526737 AAAATG---CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAG 1526681 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||||||||| ||||| || ||||| ||| || ||||| ||||| || || || Sbjct 1526680 CCTTCTGACACCATCGAAAATGTCAAAGCTAAA-ATCCAAGACAAAGAGGGTATCCCCCC 1526622 Query 206283 GGACGCTCAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 || |||| || || |||||||||||||| || ||||||||||| | || ||| | Sbjct 1526621 AGA---TCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTC 1526565 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||| |||| || ||||| || || || | ||| || | ||||| Sbjct 1526564 CGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCG 1526514 >seq7104 Length=1453772 Score = 102 bits (112), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||| |||| || ||| || || || | ||| || ||||| Sbjct 421961 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 422020 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||||||||| ||||||||||| || || ||| | | ||||| ||||| || Sbjct 422021 AA-GATTCAAGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 422079 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||| ||| | ||| || ||||||||||| ||||||| |||||||| ||||| Sbjct 422080 ACAACTGGAAGACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 422139 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || |||||||| ||||||||||| || || ||| || Sbjct 422168 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 422227 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| ||| |||||||| || |||||||| || || || Sbjct 422228 ACAATTGAGAATGTCAAAGCTAAA-ATTCAAGATAAGGAAGGAATCCCCCCAGATCAACA 422286 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| || || |||||||| |||||| | || || |||| || || | Sbjct 422287 ACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAATAT 422346 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 ||||| || || ||||| || Sbjct 422347 TCAGAAGGAATCCACTCTACA 422367 >seq3141 Length=2848 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || || ||| || || | ||| Sbjct 1359 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCGGATACTATTGAACAT 1418 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||||||| ||| || || | || || ||| Sbjct 1419 GTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCAACAGCGTCTAATTTTC 1478 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| ||||||||||| | || ||||| || || || | |||||||||||| Sbjct 1479 GCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAATATTCAGAAAGAGTCT 1538 Query 206365 AC 206366 || Sbjct 1539 AC 1540 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835 |||||||||||||| | ||||||||||||||| || | |||||||||| ||||||||| Sbjct 1540 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1481 Query 204836 GCGAAGATAAGCCGTTGTTGA 204856 ||||| || || || |||||| Sbjct 1480 GCGAAAATTAGACGCTGTTGA 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181712291861886