Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7155 280 2e-70 seq7084 266 4e-66 >seq7155 Length=3116674 Score = 280 bits (310), Expect = 2e-70 Identities = 492/713 (69%), Gaps = 9/713 (1%) Strand=Plus/Plus Query 39442 AATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTAT 39501 || ||| | ||| || |||||||| || || ||| | || |||||||| || || Sbjct 2758585 AAGCAAACGATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGAT 2758644 Query 39502 GAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTAT 39561 | || || || | ||| || |||| || || | || || | || || || | || Sbjct 2758645 TAAATTCACCGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAAT 2758704 Query 39562 TAT--CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAG 39619 ||| | | ||| ||||| ||| ||| || | |||||||| ||||| || || Sbjct 2758705 TATTTCAACAATACG--CTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACAT 2758762 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 |||||||||||||| || |||||||||| ||||| ||| || |||||||| | || Sbjct 2758763 GCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCT 2758822 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||||| |||||| || || ||||| || || | ||||||| ||| |||||||| Sbjct 2758823 GGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATA 2758882 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT----AT 39795 ||||| || || |||||||||| | | || || || ||| | | | | || Sbjct 2758883 CCTTCAACGGCAGCAAATGCAATTACACGTTCACCA-AAGTTGGCTGACTTCGAGGAAAT 2758941 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| | |||||||| || || |||||| ||||||||| ||||||||||| || Sbjct 2758942 CCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAA 2759001 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 | |||| ||| | || |||| ||||||||| ||||| | ||||||||||| Sbjct 2759002 TAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTC 2759061 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTG 39975 ||||| | || || ||||| || |||||||| || || || | ||| || || | ||| Sbjct 2759062 AGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTG 2759121 Query 39976 TACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA 40035 || || || || | ||| | | |||||||||||| || |||||| ||||| || Sbjct 2759122 GACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAA 2759181 Query 40036 AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATT 40095 ||| || || || ||| |||||||| | ||||| || | ||| |||| Sbjct 2759182 AAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATC 2759241 Query 40096 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||||||| || | ||||||||| || ||||||| ||||| || ||||||| Sbjct 2759242 CATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 2759294 >seq7084 Length=1258986 Score = 266 bits (294), Expect = 4e-66 Identities = 587/872 (67%), Gaps = 6/872 (1%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || ||||||| ||||||||| || || || || | ||| || |||||||||||| Sbjct 2274 ATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGA 2333 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 ||||| || || || || | || | || || || || || | || ||||| ||||| Sbjct 2334 TTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAATG 2393 Query 69445 GATTTCCAAACGACCCTA-GCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTG 69503 ||||| ||| | || |||||| | ||| ||| || | |||||||| Sbjct 2394 CTAAACCAAA-GACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGTTCATATTT 2452 Query 69504 TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGG 69563 ||||| | |||||| || || ||||| || |||| || || ||||| | | ||| Sbjct 2453 CAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTGG 2512 Query 69564 ACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 |||||| | ||||| | ||||| | | || ||||||||||||||||| || ||||| Sbjct 2513 ACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCCA 2572 Query 69624 AAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGAT 69682 | || ||| || | |||||||| | || ||||| || || || ||||| || | || Sbjct 2573 CA-AGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGTTTTTCTTCAAAT 2631 Query 69683 CGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTC 69742 | | ||| || | |||||||| |||||||||||| || || || || | | | || || | Sbjct 2632 CCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCC 2691 Query 69743 GTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAA 69802 ||||| | || ||||| | || | || | ||||| | |||| || ||| || | Sbjct 2692 GTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCA 2751 Query 69803 TAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTAC 69862 | |||||| ||||| | |||||| || | ||| | | ||| ||||||| || | Sbjct 2752 CCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTTTGCGCGTATGCAAT 2811 Query 69863 TAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG-TTTCAATGTG 69921 | ||||| || || || || ||| || || | ||||| | | | | || Sbjct 2812 GTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAGATG 2871 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 | | | ||||| || ||| ||| || | |||| | || ||||| || |||| ||| Sbjct 2872 TGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGC 2930 Query 69982 TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAA 70041 | || |||| | ||| || | || ||||| || || || || | ||| ||| Sbjct 2931 GGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCGGAA 2990 Query 70042 AGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACA 70101 |||| ||||| ||||| || |||| || || || ||| || || || || ||| Sbjct 2991 AGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCAACA 3050 Query 70102 CGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGAT 70161 ||||| ||||||||||| ||||| || || |||| ||| | || | || || || Sbjct 3051 CGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACTTTAGCAAATAGGAA 3110 Query 70162 TTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 ||| || |||||||| |||||||| || || Sbjct 3111 CGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 Score = 260 bits (288), Expect = 2e-64 Identities = 454/654 (69%), Gaps = 11/654 (2%) Strand=Plus/Plus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || ||||| ||||| | ||| ||||| || || || |||||| |||| ||||||||| Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || ||| || || ||| ||| | || || || | || || || | ||| ||||| Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||||||||| || || | |||||| |||||||| || | || | ||| ||| Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750 Query 68575 CAAATAGTCTT--AAAAATC---TGTTTGATATCATCTGGAAGGCTCG-TATTTTGAATG 68628 |||| ||| || | | ||| | | || | | | |||| || ||| ||| ||| Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTATGTGCTGTGGTATGGAT---TCAATATGTTGTATG 1807 Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688 || || | | || |||||| |||| || || ||||||| |||||| ||| ||| Sbjct 1808 GAGCCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTT 1867 Query 68689 AAAACTC-TAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGT 68747 | | | | ||| || || |||| || | ||||||||| || || | ||| | ||| || Sbjct 1868 AGATCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGT 1926 Query 68748 GTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 ||||||||| || || ||||| | || ||||| || |||| ||||||||||||||| Sbjct 1927 ATAAATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGA 1986 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 ||||||||||| || || | || ||| || | | ||||||| | ||||| || Sbjct 1987 AGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACCATGTTGCTTTATTTTCTC 2046 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAG 68927 || | | |||||| ||||||||||| |||| || ||| | || || |||| Sbjct 2047 CTTCAATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAA 2106 Query 68928 AATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAG 68987 ||| || ||||| | ||| || ||||| |||||||| | || | | |||||||| Sbjct 2107 AATACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTAA 2166 Query 68988 TTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 69041 ||| ||||| || || ||||| || || ||||| |||||||| || | || ||| Sbjct 2167 TTCGCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686847270144240