Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq7133 190 2e-43
seq7155 156 3e-33
seq7115 114 1e-20
>seq7133
Length=2056560
Score = 190 bits (210), Expect = 2e-43
Identities = 392/575 (68%), Gaps = 6/575 (1%)
Strand=Plus/Plus
Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913
|||||||| ||||||||||| || || |||||||| ||||||| ||| |||||||| ||
Sbjct 1568817 GATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCC 1568876
Query 40914 AAATAT-GACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGT 40972
|| || || ||| | | | ||| | || | || || |||||| | ||| ||
Sbjct 1568877 AAGTACAGAAACTGCAAAGACAG-TTACAAAGATGAGGGTATAGATCAACTTCAGCAAGT 1568935
Query 40973 TATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCC 41032
|| || || || | | |||| || |||||||| ||| ||| || ||||| ||
Sbjct 1568936 AATTGACACAATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAATCC 1568995
Query 41033 AACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATG-TCAGTTTTACGTTT 41091
|| | | | ||||| | ||||||||||| |||| || || |||| |||
Sbjct 1568996 TGTCGATATCCCTCAAATGGCTCTACCACCTTGTCA-TTGTCTTGCACAATTTTTTGTTG 1569054
Query 41092 GCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCC 41151
|||||| || | || |||||||| || ||| | | || |||||| | || || |
Sbjct 1569055 CCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTGTAC 1569114
Query 41152 CGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAA 41211
| ||||| || || || ||| |||| || ||||||||||| || |||| || |
Sbjct 1569115 CATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATCTCC 1569174
Query 41212 AACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271
||| || || || || ||||| || || |||| |||| | || | |||||| || ||
Sbjct 1569175 GACCAGGGGATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTGAAG 1569234
Query 41272 CGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCG 41331
| |||| |||||| | || ||||||||| | | ||||| | |||||||||| || |
Sbjct 1569235 CATTAAAAGAACAGTTAACGCGAAAACCTCGGGCGTTTCCTAAATTACTTATTAAGCGTG 1569294
Query 41332 CTGTTGAAA-ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCG 41390
||| ||| |||||| || || | | || || | || |||||||||||||
Sbjct 1569295 -AGTTAAAATGCATTGAAGACTTCACGTTTAAGGACTTCGATCTTATCGATTACAATCCG 1569353
Query 41391 TACCCTAAAATCCACATGGACATGTCTGTATGATA 41425
|| || ||||| ||||| ||| |||| | |||
Sbjct 1569354 TATCCAAAAATTTCTATGGAAATGGCTGTTTAATA 1569388
>seq7155
Length=3116674
Score = 156 bits (172), Expect = 3e-33
Identities = 365/541 (67%), Gaps = 11/541 (2%)
Strand=Plus/Minus
Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810
||| | || || || ||||||| ||| ||||| ||| | ||||||| | | |||||
Sbjct 2759292 GCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATTGG 2759233
Query 43811 ATTGCAT-TAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT 43867
||| | || | || ||| ||||||||| || || || || ||||| ||
Sbjct 2759232 ---GCACGTCTCACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCC 2759176
Query 43868 GCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATT 43926
|| || || || || ||||||||| | ||| || || ||| || ||||| ||| |
Sbjct 2759175 GCATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGTTTCTGC-CAGGAAGTCCAAGT 2759117
Query 43927 ACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAAT 43986
|||| ||||| || || ||||| ||||||||||| || || ||| | ||||| |||||
Sbjct 2759116 GACAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAAT 2759057
Query 43987 GTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAA 44046
||| || | | || ||||| || || || || | | | | | || || || ||
Sbjct 2759056 GTATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTACTTATTCAA 2758997
Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106
||| ||||| ||| | ||||| | || | || ||||| ||||| ||| |||||
Sbjct 2758996 TGCTATAGAGACAATGCCTGCCGTAAAGCGCAAGGCAGATTGGGCGCTTGCTTGGATTTC 2758937
Query 44107 TTC-AAATGATTC--TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163
|| || | | | ||||| ||||| | | || ||||| | || ||||| || ||
Sbjct 2758936 CTCGAAGTCAGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATCTT 2758877
Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223
||| || ||||| | || || ||| | |||||||| ||||| ||||| || ||
Sbjct 2758876 CTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTT 2758817
Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
||| ||||| ||||| |||| || ||||| || | ||||| || || || || ||
Sbjct 2758816 GACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTT 2758757
Query 44284 G 44284
|
Sbjct 2758756 G 2758756
>seq7115
Length=1944776
Score = 114 bits (126), Expect = 1e-20
Identities = 188/270 (70%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG--- 19604
|||||| ||||| || | |||||| | || || |||||||| | || || |
Sbjct 1444573 TTTGCATATTATCATTTTCGATGAAATAGATGCGATCTGTAAAGCCCGTGGCTCAGTCGC 1444632
Query 19605 TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661
|| ||| || ||||| || || || ||||||||| | || | ||| | || |||||
Sbjct 1444633 TGGCAATAGTGGCGTACACGATACAGTGGTCAATCAATTGCTCGCTAAAATCGATGGTGT 1444692
Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721
| |||||||| || ||||| || || |||||||| || |||| || | || |||
Sbjct 1444693 CGAACAACTGAACAACATTTTGGTGATCGGCATGACAAACAGACGTGACATGATTGACGA 1444752
Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781
|| || | ||||||||||| |||||| | | || || |||| || ||| | |||
Sbjct 1444753 AGCTTTGCTGCGACCCGGTCGCTTGGAAGTGCAAATGGAGATTAGTTTGCCCAACGAAGA 1444812
Query 19782 TGGACGTGTGGAAATTTTAAACATACATAC 19811
|| |||||| ||||| | || ||||||||
Sbjct 1444813 GGGTCGTGTGCAAATTCTGAATATACATAC 1444842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397421287931830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |