Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7133 190 2e-43 seq7155 156 3e-33 seq7115 114 1e-20 >seq7133 Length=2056560 Score = 190 bits (210), Expect = 2e-43 Identities = 392/575 (68%), Gaps = 6/575 (1%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 |||||||| ||||||||||| || || |||||||| ||||||| ||| |||||||| || Sbjct 1568817 GATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCC 1568876 Query 40914 AAATAT-GACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGT 40972 || || || ||| | | | ||| | || | || || |||||| | ||| || Sbjct 1568877 AAGTACAGAAACTGCAAAGACAG-TTACAAAGATGAGGGTATAGATCAACTTCAGCAAGT 1568935 Query 40973 TATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCC 41032 || || || || | | |||| || |||||||| ||| ||| || ||||| || Sbjct 1568936 AATTGACACAATCAGAAATAATCCAAATGATCGACGTATTATAATGTCTGCTTGGAATCC 1568995 Query 41033 AACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATG-TCAGTTTTACGTTT 41091 || | | | ||||| | ||||||||||| |||| || || |||| ||| Sbjct 1568996 TGTCGATATCCCTCAAATGGCTCTACCACCTTGTCA-TTGTCTTGCACAATTTTTTGTTG 1569054 Query 41092 GCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCC 41151 |||||| || | || |||||||| || ||| | | || |||||| | || || | Sbjct 1569055 CCAATGGAGAGTTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTGTAC 1569114 Query 41152 CGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAA 41211 | ||||| || || || ||| |||| || ||||||||||| || |||| || | Sbjct 1569115 CATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATCTCC 1569174 Query 41212 AACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 ||| || || || || ||||| || || |||| |||| | || | |||||| || || Sbjct 1569175 GACCAGGGGATTTCGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTGAAG 1569234 Query 41272 CGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCG 41331 | |||| |||||| | || ||||||||| | | ||||| | |||||||||| || | Sbjct 1569235 CATTAAAAGAACAGTTAACGCGAAAACCTCGGGCGTTTCCTAAATTACTTATTAAGCGTG 1569294 Query 41332 CTGTTGAAA-ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCG 41390 ||| ||| |||||| || || | | || || | || ||||||||||||| Sbjct 1569295 -AGTTAAAATGCATTGAAGACTTCACGTTTAAGGACTTCGATCTTATCGATTACAATCCG 1569353 Query 41391 TACCCTAAAATCCACATGGACATGTCTGTATGATA 41425 || || ||||| ||||| ||| |||| | ||| Sbjct 1569354 TATCCAAAAATTTCTATGGAAATGGCTGTTTAATA 1569388 >seq7155 Length=3116674 Score = 156 bits (172), Expect = 3e-33 Identities = 365/541 (67%), Gaps = 11/541 (2%) Strand=Plus/Minus Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810 ||| | || || || ||||||| ||| ||||| ||| | ||||||| | | ||||| Sbjct 2759292 GCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATTGG 2759233 Query 43811 ATTGCAT-TAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT 43867 ||| | || | || ||| ||||||||| || || || || ||||| || Sbjct 2759232 ---GCACGTCTCACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCC 2759176 Query 43868 GCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATT 43926 || || || || || ||||||||| | ||| || || ||| || ||||| ||| | Sbjct 2759175 GCATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGTTTCTGC-CAGGAAGTCCAAGT 2759117 Query 43927 ACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAAT 43986 |||| ||||| || || ||||| ||||||||||| || || ||| | ||||| ||||| Sbjct 2759116 GACAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAAT 2759057 Query 43987 GTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAA 44046 ||| || | | || ||||| || || || || | | | | | || || || || Sbjct 2759056 GTATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTACTTATTCAA 2758997 Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 ||| ||||| ||| | ||||| | || | || ||||| ||||| ||| ||||| Sbjct 2758996 TGCTATAGAGACAATGCCTGCCGTAAAGCGCAAGGCAGATTGGGCGCTTGCTTGGATTTC 2758937 Query 44107 TTC-AAATGATTC--TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 || || | | | ||||| ||||| | | || ||||| | || ||||| || || Sbjct 2758936 CTCGAAGTCAGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATCTT 2758877 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||| || ||||| | || || ||| | |||||||| ||||| ||||| || || Sbjct 2758876 CTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTT 2758817 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| ||||| |||| || ||||| || | ||||| || || || || || Sbjct 2758816 GACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTT 2758757 Query 44284 G 44284 | Sbjct 2758756 G 2758756 >seq7115 Length=1944776 Score = 114 bits (126), Expect = 1e-20 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG--- 19604 |||||| ||||| || | |||||| | || || |||||||| | || || | Sbjct 1444573 TTTGCATATTATCATTTTCGATGAAATAGATGCGATCTGTAAAGCCCGTGGCTCAGTCGC 1444632 Query 19605 TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 || ||| || ||||| || || || ||||||||| | || | ||| | || ||||| Sbjct 1444633 TGGCAATAGTGGCGTACACGATACAGTGGTCAATCAATTGCTCGCTAAAATCGATGGTGT 1444692 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | |||||||| || ||||| || || |||||||| || |||| || | || ||| Sbjct 1444693 CGAACAACTGAACAACATTTTGGTGATCGGCATGACAAACAGACGTGACATGATTGACGA 1444752 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 || || | ||||||||||| |||||| | | || || |||| || ||| | ||| Sbjct 1444753 AGCTTTGCTGCGACCCGGTCGCTTGGAAGTGCAAATGGAGATTAGTTTGCCCAACGAAGA 1444812 Query 19782 TGGACGTGTGGAAATTTTAAACATACATAC 19811 || |||||| ||||| | || |||||||| Sbjct 1444813 GGGTCGTGTGCAAATTCTGAATATACATAC 1444842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397421287931830