Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq7084 181 9e-41 seq3141 113 4e-20 seq7104 107 2e-18 seq7156 91.5 1e-13 >seq7084 Length=1258986 Score = 181 bits (200), Expect = 9e-41 Identities = 412/608 (68%), Gaps = 25/608 (4%) Strand=Plus/Plus Query 131367 AATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGAT 131426 |||| | |||||||||| || |||||||| | ||| || ||||| | ||| ||||||| Sbjct 2263 AATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGAT 2322 Query 131427 TGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGA 131485 | || || ||| ||| | || || |||| |||||| || ||||| || || ||||| Sbjct 2323 TACTCTTTCGATT-ACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGC 2381 Query 131486 GTTTCAATAATGT--ATCGAAAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGC-CG 131542 | |||||||||| | | ||||| ||| | || || || || ||||||| || Sbjct 2382 GATTCAATAATGCTAAACCAAAGACTTT--GTGCT-----TTTATTTTCTTATTGGCACG 2434 Query 131543 CGTTT----TTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AAACGAACTGTCC 131596 || ||| || || || ||| |||| || | || || | || ||| Sbjct 2435 TCCTTCCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGT-- 2492 Query 131597 AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTC 131656 ||| |||||| | | ||||||||||||||||| | | | ||| || || ||| Sbjct 2493 AAACCGGGACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTC 2552 Query 131657 ATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTA 131716 ||||| | ||| || | ||| || || || |||| |||||| || | ||||||| || Sbjct 2553 ATAAATAGATCAGGTATCCACAAGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTA 2612 Query 131717 CCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATAC 131776 || | |||| ||||||| ||||| || ||||| || |||||||| ||||| | || Sbjct 2613 CCAGTGTTTTTCTTCAAATCCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAG 2672 Query 131777 ACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACCATGTTGTTG 131833 | || | ||||| || |||||| ||||||| |||| || | || || ||| Sbjct 2673 ATGGCAAAGGCGCCGGGCCGTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTG 2732 Query 131834 TATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAA-TGTAGCT 131892 | || |||||||| ||| ||||||| || | || | ||| || | | || || || | Sbjct 2733 AACACTCGCAACATAGGCACCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAG-T 2791 Query 131893 GCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAG 131952 ||| || || | || || ||||| || |||||||| || | |||| || || | Sbjct 2792 GCCTTTTGCGCGTATGCAATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAA 2851 Query 131953 TGCGCATT 131960 ||| |||| Sbjct 2852 TGCACATT 2859 Score = 123 bits (136), Expect = 2e-23 Identities = 446/693 (64%), Gaps = 11/693 (2%) Strand=Plus/Plus Query 130403 CTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATG 130462 || || || || || ||||| || ||||| | || || || || ||||||||||||||| Sbjct 1538 CTTTTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATG 1597 Query 130463 CCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TAAT 130520 || || ||||| || || || || || || | | | ||| || | Sbjct 1598 CCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATA--GAAGTAAGCTTGCCATAGT 1655 Query 130521 TGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTG 130580 |||| | |||||| |||||||| ||| || ||||| || || || || | |||| Sbjct 1656 TGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTG 1715 Query 130581 CAGCCATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAA 130640 ||||||| | | | |||||| ||||||||| | || ||||||||||| | | Sbjct 1716 CAGCCATTTTAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTA 1775 Query 130641 TGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGC 130700 |||| | |||||| |||| ||| | | ||| ||| |||||| | || Sbjct 1776 TGTGCTGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTT 1835 Query 130701 GCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 |||| | ||| |||| || | || ||||| || ||| |||| ||| | | Sbjct 1836 TCATATCATCATCCCACAAACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTACAA 1895 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 |||||| ||||| | || || || | ||||| || ||| |||||||||| | Sbjct 1896 CTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATG 1955 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAG 130880 | || |||||||| | ||||| || || | || || |||||| || | | | || Sbjct 1956 ACTCATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAG 2015 Query 130881 AATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGG 130940 | || || | ||| || | | ||||| ||||||||| ||||| ||| ||| | Sbjct 2016 AGTTGCGGATACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAG 2075 Query 130941 TAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGA-- 130998 | ||| | || | |||||| ||| | |||| || || ||||| |||| || | Sbjct 2076 TTGGTGT---TTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGG--TGAACC 2130 Query 130999 TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCC 131058 || ||| ||| ||| | || | ||| | ||| || |||||||| || || Sbjct 2131 TTTATACGTTTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCC 2190 Query 131059 GTAATAAATGGTTTCGGCAATTTGTTTATTTAA 131091 || ||||| |||||| ||||| | ||| || Sbjct 2191 ATAGTAAATAGTTTCGAATATTTGCTGATTCAA 2223 >seq3141 Length=2848 Score = 113 bits (124), Expect = 4e-20 Identities = 170/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||| ||||| || ||||| ||||| |||||||| ||||| || |||| ||| | |||| Sbjct 1553 TACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGT-GCGACCATCTT 1495 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | || || |||||| |||| |||||||||||||| ||||| | || || ||||| Sbjct 1494 CCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTT 1435 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 || ||| || | ||| | ||| || | | ||||| || ||||| || | | Sbjct 1434 GAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCT 1375 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTATTAAACCTTAT 27274 | ||||| || ||||| || || |||||||| |||| || ||| | |||||| || Sbjct 1374 TACCCGTAAGGGTTTTTACGAAAATTTGCATTGCTG--AACAATCTTACAAACCTAAT 1319 >seq7104 Length=1453772 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||||| || || || || ||||| ||| || |||| ||||||| Sbjct 422145 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCC 422086 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||||||||| | || | ||| |||||||| || || | || ||||| || Sbjct 422085 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 422026 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | |||| | ||| || | | |||||| || ||||| || | ||| Sbjct 422025 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTG 421966 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||| ||||||||||| Sbjct 421965 CCAGTCAAGGTCTTCACGAAGATTTGCAT 421937 >seq7156 Length=3407544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||||||| | || || || ||||| || ||||||||| || | |||| | Sbjct 1526520 CGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCA 1526579 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||| |||||| | || | |||||||||||| || || | ||||||||| Sbjct 1526580 TCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTG 1526639 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || ||| | |||| | ||||| | | || || |||| || || Sbjct 1526640 TCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATG 1526699 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || | ||||| || || || ||||| Sbjct 1526700 GTCTTACCAGTTAAGGTTTTGACGAAAATCTGCAT 1526734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424897288088592