Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7164 100 3e-16 >seq7164 Length=6205789 Score = 100 bits (110), Expect = 3e-16 Identities = 184/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||| ||| || ||||| ||||| ||||||||||| Sbjct 6011519 GTGAAAATATAACGAGCGCTCGCACAATCTTTACCACCCTGCAGACGTGTACCGAATTGA 6011578 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| |||||||| | || | || || | ||||| | ||||| ||||| ||||| Sbjct 6011579 CCACGGGGCTCCAATAAATTAATATTATTTGATCCCACGTAATTTTGCGCCAAATTGACT 6011638 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || ||| | || || | |||||| || || || || | | || ||||| | || Sbjct 6011639 ATGGTAGCCTGCAGTGACATCTCACCGTGATGGTAGGCGGACATTTCAGCCACTGAACCA 6011698 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAG--GTTCTTCTTGAGGCAGGCATAAATCA 117542 | || || || || |||| || |||| | ||| |||| |||| | | || | Sbjct 6011699 GACAATTGCGCAACTTTCA--CCTCACGTTTGTCGTTACGTTTGAAACAGGTAAACATAA 6011756 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATC 117570 | ||||| || | |||||| | |||||| Sbjct 6011757 CTTTGCGTTGGCCTGGCTTAAAACCATC 6011784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547166983126800