Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3141 159 4e-34 seq7104 150 2e-31 seq7084 98.7 1e-15 seq7159 86.0 7e-12 >seq3141 Length=2848 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| || ||||| || ||||||||||||||| | Sbjct 1343 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTC 1402 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || | ||| | |||||||| || ||||| |||||||| || || || Sbjct 1403 GGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCA 1462 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||||||||| || || |||||| | || |||| ||| || | || |||||||| Sbjct 1463 ACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAA 1522 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || || || | ||| |||| | |||||| | ||||| Sbjct 1523 TATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1570 >seq7104 Length=1453772 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || |||||||| || ||||| |||||||| || Sbjct 421936 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 421995 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || ||||| ||||| ||||| || ||||| || ||||| || Sbjct 421996 CGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCA 422055 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| ||||| ||||| ||||| || || | || || || | || || || Sbjct 422056 ACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAA 422115 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||| | || | ||||| || ||||| Sbjct 422116 CATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 422163 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || | || || || || || ||| | ||||||||| | Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || ||||||||||| || ||||| ||||| || ||||| || Sbjct 422225 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 422284 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| ||||| || || | ||||||| || || || | ||||||||| Sbjct 422285 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 422344 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||||||||| ||| |||| | || | || ||||| Sbjct 422345 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 422391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || || || || ||||| || |||||||| | Sbjct 422393 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACGCTGGAGGTTGAACCTTCC 422452 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519 |||| |||| ||| | || || |||||||||||||||||||| ||||||||| Sbjct 422453 GATACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCCTCCA 422506 >seq7084 Length=1258986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096 ||| |||| ||| ||||||||||||||||| || |||||||||||| | || ||||| Sbjct 1579 CGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGA 1638 Query 80097 ACTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155 | | ||||| || ||| |||| | ||| | ||||| | |||||| |||| || Sbjct 1639 AGTAAGCTTGCCATAGT-TGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGA 1697 Query 80156 TGAAAGCCCCACGATCTGCCGCCATTTCAAT 80186 |||| || || |||||||| ||||||| ||| Sbjct 1698 TGAATGCACCGCGATCTGCAGCCATTTTAAT 1728 >seq7159 Length=3702663 Score = 86.0 bits (94), Expect = 7e-12 Identities = 182/267 (68%), Gaps = 11/267 (4%) Strand=Plus/Plus Query 24849 AACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCG 24908 ||||| ||||| || || || |||||||| || || || ||||||| || || || Sbjct 2262852 AACTATCGTGAAGCATATAATATGTATGCATGTAATGGCATATTGTTCAATCACGAATCC 2262911 Query 24909 GAGCGTCGGGGACCTGAA---TTTGTTACACGAAAGATTACTCTT--GGTATTGACCAT- 24962 ||||| || |||| || || ||||| || || || | | |||| || || Sbjct 2262912 CCACGTCGTGG---TGAAAATTTCGTGACACGCAAAATAACGCGTTCGGTAGCGAAAATA 2262968 Query 24963 -TGGATCAAGACAAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGG 25021 | ||||| | | || | || | || |||| || || || | |||||||||||||| Sbjct 2262969 TTTCATCAACA-ATTGGAATCTTTCGAATTGGGTAATCTCGACTCGAAACGTGATTGGGG 2263027 Query 25022 GCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGA 25081 || ||| || ||||| || ||||||||| ||| | ||| | | || || | || Sbjct 2263028 TCACGCAATGGATTACGTGGAGGCCATGTGGATGATGTTGCAATTGGAAAAACCTGCTGA 2263087 Query 25082 TTTTGTGATCGGCACCGGTCAGACGCA 25108 ||||||||| | ||||||| | ||||| Sbjct 2263088 TTTTGTGATTGCCACCGGTGAAACGCA 2263114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570259314445920