Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3141 159 4e-34
seq7104 150 2e-31
seq7084 98.7 1e-15
seq7159 86.0 7e-12
>seq3141
Length=2848
Score = 159 bits (176), Expect = 4e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || || || ||||| || ||||| || ||||||||||||||| |
Sbjct 1343 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTC 1402
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| |||| | || | ||| | |||||||| || ||||| |||||||| || || ||
Sbjct 1403 GGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCA 1462
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||||||||||| || || |||||| | || |||| ||| || | || ||||||||
Sbjct 1463 ACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAA 1522
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | || || || || || | ||| |||| | |||||| | |||||
Sbjct 1523 TATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1570
>seq7104
Length=1453772
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| | || |||||||| || ||||| |||||||| ||
Sbjct 421936 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 421995
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| |||| |||| | || ||||| ||||| ||||| || ||||| || ||||| ||
Sbjct 421996 CGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCA 422055
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| |||| ||||| ||||| ||||| || || | || || || | || || ||
Sbjct 422056 ACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAA 422115
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||| | || | ||||| || |||||
Sbjct 422116 CATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 422163
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || ||||| || | || || || || || ||| | ||||||||| |
Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| | || ||||||||||| || ||||| ||||| || ||||| ||
Sbjct 422225 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 422284
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | ||||| ||||| || || | ||||||| || || || | |||||||||
Sbjct 422285 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 422344
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||||||||| ||| |||| | || | || |||||
Sbjct 422345 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 422391
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| || || || | || || || || ||||| || |||||||| |
Sbjct 422393 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACGCTGGAGGTTGAACCTTCC 422452
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCA 27519
|||| |||| ||| | || || |||||||||||||||||||| |||||||||
Sbjct 422453 GATACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCCTCCA 422506
>seq7084
Length=1258986
Score = 98.7 bits (108), Expect = 1e-15
Identities = 114/151 (75%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096
||| |||| ||| ||||||||||||||||| || |||||||||||| | || |||||
Sbjct 1579 CGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGA 1638
Query 80097 ACTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155
| | ||||| || ||| |||| | ||| | ||||| | |||||| |||| ||
Sbjct 1639 AGTAAGCTTGCCATAGT-TGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGA 1697
Query 80156 TGAAAGCCCCACGATCTGCCGCCATTTCAAT 80186
|||| || || |||||||| ||||||| |||
Sbjct 1698 TGAATGCACCGCGATCTGCAGCCATTTTAAT 1728
>seq7159
Length=3702663
Score = 86.0 bits (94), Expect = 7e-12
Identities = 182/267 (68%), Gaps = 11/267 (4%)
Strand=Plus/Plus
Query 24849 AACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCG 24908
||||| ||||| || || || |||||||| || || || ||||||| || || ||
Sbjct 2262852 AACTATCGTGAAGCATATAATATGTATGCATGTAATGGCATATTGTTCAATCACGAATCC 2262911
Query 24909 GAGCGTCGGGGACCTGAA---TTTGTTACACGAAAGATTACTCTT--GGTATTGACCAT- 24962
||||| || |||| || || ||||| || || || | | |||| || ||
Sbjct 2262912 CCACGTCGTGG---TGAAAATTTCGTGACACGCAAAATAACGCGTTCGGTAGCGAAAATA 2262968
Query 24963 -TGGATCAAGACAAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGG 25021
| ||||| | | || | || | || |||| || || || | ||||||||||||||
Sbjct 2262969 TTTCATCAACA-ATTGGAATCTTTCGAATTGGGTAATCTCGACTCGAAACGTGATTGGGG 2263027
Query 25022 GCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGA 25081
|| ||| || ||||| || ||||||||| ||| | ||| | | || || | ||
Sbjct 2263028 TCACGCAATGGATTACGTGGAGGCCATGTGGATGATGTTGCAATTGGAAAAACCTGCTGA 2263087
Query 25082 TTTTGTGATCGGCACCGGTCAGACGCA 25108
||||||||| | ||||||| | |||||
Sbjct 2263088 TTTTGTGATTGCCACCGGTGAAACGCA 2263114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570259314445920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |