Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq7156 167 2e-36
seq7104 167 2e-36
seq3141 125 6e-24
seq7143 122 8e-23
>seq7156
Length=3407544
Score = 167 bits (184), Expect = 2e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || ||||| | || || ||| | || || | || || || || ||
Sbjct 1526734 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTCT 1526675
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| ||||| ||||||||||| || || || || ||||||
Sbjct 1526674 GACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGATCAA 1526615
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | |||||| |||||||||||||| || ||| | ||||| ||||||
Sbjct 1526614 CAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 1526555
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| ||| | ||||||||| ||||| | || ||||| ||
Sbjct 1526554 ATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 1526505
>seq7104
Length=1453772
Score = 167 bits (184), Expect = 2e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||| |||||| | || ||||| || || ||||| |||
Sbjct 421937 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATCC 421996
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || ||||||||||||||||| || || || ||||||
Sbjct 421997 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAA 422056
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| |||||||| | ||||| |||||| |||||||| | || | ||||||||||||
Sbjct 422057 CAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAAC 422116
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || | ||||||||| | ||| | || ||||||||
Sbjct 422117 ATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCAT 422166
Score = 141 bits (156), Expect = 8e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || |||||| |||| || || | || ||| | || || || || ||
Sbjct 422164 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 422223
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||||| |||||| ||||||||||| || ||||| || || || |||||
Sbjct 422224 CGATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 422283
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||| ||||| || | ||| |||||||| ||||| || | || | ||||| || ||
Sbjct 422284 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAA 422343
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||| || || ||||||| ||| | || || || ||||| ||
Sbjct 422344 TATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 422394
>seq3141
Length=2848
Score = 125 bits (138), Expect = 6e-24
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044
|| ||||| || || |||||||| || || || ||| | || |||||||| || || ||
Sbjct 1341 GCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCT 1400
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
|| || | ||||| || || ||||||||||| || ||||| || || || |||
Sbjct 1401 TCGGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGAT 1460
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
||||||||| |||| | |||||| || ||||||||||| || || | | || ||
Sbjct 1461 CAACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTAT 1520
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAA 27223
|| ||||| || ||||| || || ||||| || | ||| | | |||||| || |||
Sbjct 1521 AATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGGCGCAAAAAA 1579
>seq7143
Length=2789641
Score = 122 bits (134), Expect = 8e-23
Identities = 133/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535
|||||||| ||||||| |||| | || |||| |||||| || || || |||| |||
Sbjct 1271252 TGGAACGCAGCACAACTGCAGTTGTTACGCGAAGCCAAAATACATGGTTTCCTGCGTATG 1271311
Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595
|||||||||||||||||| |||| |||||| | |||||| | || || || |||
Sbjct 1271312 TATTGGGCAAAAAAGATACTGGAGTGGTCTTCTACGCCTGATGCTGCTTTAGAAACAGCA 1271371
Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652
|| ||||| |||||| | || ||||||||||| ||| |||| || || || |||
Sbjct 1271372 ATTTTTTTGAATGATAAATATAGTTTAGATGGTTTAGATCCAAACGGATATGTTGGT 1271428
Score = 116 bits (128), Expect = 3e-21
Identities = 132/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535
||||| || || |||| || || || ||||||||||||||||||||| | || | |
Sbjct 1275016 TGGAATGCAGCTCAACTACAACTGGTTCGTGAAGGCAAAATGCACGGATTTCTTCGTAAG 1275075
Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595
|||||||| ||||||||| |||||||||| || || | || |||||| || |||
Sbjct 1275076 TATTGGGCCAAAAAGATACTGGAATGGTCCAAGTCACCAGAAGCTGCGCTAGAAACTGCA 1275135
Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652
|| | ||| ||||| | || ||||||||||| | ||||| || || || || |||
Sbjct 1275136 ATTTATTTAAATGACAAATATAGTTTAGATGGCAGAGATTCCAACGGTTATGTGGGT 1275192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434879442184320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |