Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7156 167 2e-36 seq7104 167 2e-36 seq3141 125 6e-24 seq7143 122 8e-23 >seq7156 Length=3407544 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || ||| | || || | || || || || || Sbjct 1526734 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTCT 1526675 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||| ||||||||||| || || || || |||||| Sbjct 1526674 GACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGATCAA 1526615 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| |||||||||||||| || ||| | ||||| |||||| Sbjct 1526614 CAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAAC 1526555 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||||||||| ||||| | || ||||| || Sbjct 1526554 ATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 1526505 >seq7104 Length=1453772 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || ||||| || || ||||| ||| Sbjct 421937 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATCC 421996 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||||||||||||||| || || || |||||| Sbjct 421997 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAA 422056 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| |||||| |||||||| | || | |||||||||||| Sbjct 422057 CAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAAC 422116 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||||||||| | ||| | || |||||||| Sbjct 422117 ATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCAT 422166 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| |||| || || | || ||| | || || || || || Sbjct 422164 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 422223 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| ||||||||||| || ||||| || || || ||||| Sbjct 422224 CGATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 422283 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||| |||||||| ||||| || | || | ||||| || || Sbjct 422284 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAA 422343 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || ||||||| ||| | || || || ||||| || Sbjct 422344 TATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 422394 >seq3141 Length=2848 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || ||||| || || |||||||| || || || ||| | || |||||||| || || || Sbjct 1341 GCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCT 1400 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || || | ||||| || || ||||||||||| || ||||| || || || ||| Sbjct 1401 TCGGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGAT 1460 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||||||| |||| | |||||| || ||||||||||| || || | | || || Sbjct 1461 CAACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTAT 1520 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAA 27223 || ||||| || ||||| || || ||||| || | ||| | | |||||| || ||| Sbjct 1521 AATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGGCGCAAAAAA 1579 >seq7143 Length=2789641 Score = 122 bits (134), Expect = 8e-23 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||||| ||||||| |||| | || |||| |||||| || || || |||| ||| Sbjct 1271252 TGGAACGCAGCACAACTGCAGTTGTTACGCGAAGCCAAAATACATGGTTTCCTGCGTATG 1271311 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||||||||||||| |||| |||||| | |||||| | || || || ||| Sbjct 1271312 TATTGGGCAAAAAAGATACTGGAGTGGTCTTCTACGCCTGATGCTGCTTTAGAAACAGCA 1271371 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || ||||| |||||| | || ||||||||||| ||| |||| || || || ||| Sbjct 1271372 ATTTTTTTGAATGATAAATATAGTTTAGATGGTTTAGATCCAAACGGATATGTTGGT 1271428 Score = 116 bits (128), Expect = 3e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 ||||| || || |||| || || || ||||||||||||||||||||| | || | | Sbjct 1275016 TGGAATGCAGCTCAACTACAACTGGTTCGTGAAGGCAAAATGCACGGATTTCTTCGTAAG 1275075 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||| ||||||||| |||||||||| || || | || |||||| || ||| Sbjct 1275076 TATTGGGCCAAAAAGATACTGGAATGGTCCAAGTCACCAGAAGCTGCGCTAGAAACTGCA 1275135 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || | ||| ||||| | || ||||||||||| | ||||| || || || || ||| Sbjct 1275136 ATTTATTTAAATGACAAATATAGTTTAGATGGCAGAGATTCCAACGGTTATGTGGGT 1275192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434879442184320