Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq7156 107 1e-18 seq7104 104 2e-17 >seq7156 Length=3407544 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| ||||| || ||||| | ||||| || || || | || ||||| Sbjct 1526737 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCT 1526678 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| |||||| ||||| |||||||| ||| | || | Sbjct 1526677 TCTGACACCATCGAAAAT--GTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAG 1526620 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || || || || || ||||||||||||||||| || | |||| ||||||||| | Sbjct 1526619 ATCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACT 1526560 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| || | ||||||||| ||||| | ||||| || Sbjct 1526559 ACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGG 1526508 >seq7104 Length=1453772 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || || ||||| ||||| |||||||| |||||| |||| Sbjct 422030 GACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAA 422089 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||||| || ||| || | ||||||||| | Sbjct 422090 GACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTT 422149 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 422150 CGTCTACGTGGTGGC 422164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355831320534882