Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7104 167 2e-36 seq3141 152 3e-32 seq7156 136 3e-27 >seq7104 Length=1453772 Score = 167 bits (184), Expect = 2e-36 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||| | || || || || |||||||| || ||||| | Sbjct 421934 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 421993 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| |||||| | ||||| | || | || ||||||||||| | || ||||| Sbjct 421994 TCCGATACTATTGAAAATGTTAAAGCTAAGA-TTCAAGACAAAGAAGGAATCCCCCCAGA 422052 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| |||||||| |||||||| |||||||||||||||| ||||||| | |||||| Sbjct 422053 TCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTA 422112 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || || ||||| ||| | ||||| ||| Sbjct 422113 CAACATCCAGAAGGAGTCTACACTTCATTTGGTT 422146 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| | ||||||||||| |||||| | || ||||| | | Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | |||||| || || ||||| | || |||||||| Sbjct 422225 GATACAATTGAGAATGTCAAAGC-TAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 422283 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || || || |||||||| |||| || | |||||| | ||| || || Sbjct 422284 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAA 422343 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| ||||||||||| || | || || || || Sbjct 422344 TATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 422391 >seq3141 Length=2848 Score = 152 bits (168), Expect = 3e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||| ||||| || || |||||||| || ||||| | | Sbjct 1343 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTC 1402 Query 23670 GGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||| ||||| || |||| | |||| || || || ||||| | ||||| |||| Sbjct 1403 GGATACTATTGAACATGTTAAGTCCAAAA-TTCAAGATAAGGAAGGAATTCCGCCTGATC 1461 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||| |||| || ||||| || ||| ||||||| | ||||| || | || || | Sbjct 1462 AACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATA 1521 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || |||||||| ||||| |||||||| Sbjct 1522 ATATTCAGAAAGAGTCTACATTGCATTTAGT 1552 >seq7156 Length=3407544 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||| | || || || || ||||| | || || || | Sbjct 1526737 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCT 1526678 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | ||| ||||| |||||||| ||| | || |||||| Sbjct 1526677 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGAT 1526618 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||||||||| || || ||||| |||||| ||||||| | ||||| || ||| ||| Sbjct 1526617 CAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTAC 1526558 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||| ||||| || | ||||| ||| Sbjct 1526557 AACATCCAAAAGGAGTCAACCCTCCATTTGGTT 1526525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337980079720328