Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7156 143 6e-29 seq7166 132 1e-25 seq3016 123 6e-23 seq7104 113 1e-19 >seq7156 Length=3407544 Score = 143 bits (158), Expect = 6e-29 Identities = 169/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||||| || || || ||||||| ||||| |||| ||| || Sbjct 1526513 ACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 1526572 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| | || ||||| || || || ||||| Sbjct 1526573 GCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACC 1526632 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 || ||||||||||| ||| || || ||| |||||||||||| || | || || |||| Sbjct 1526633 CTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTA 1526691 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| ||||| || || || ||||| | ||| | |||||||| Sbjct 1526692 AGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737 >seq7166 Length=15915 Score = 132 bits (146), Expect = 1e-25 Identities = 132/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || || ||||| || || || ||||||||| | ||||| Sbjct 1682 CAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTATAGTTATA 1741 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||| | ||||||||||| | || ||||| ||| Sbjct 1742 CCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCCCGAT 1801 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 || || |||||| | | || |||||||| ||||||||| |||| |||||| Sbjct 1802 ATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCC 1852 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||| ||||| ||||||||||| ||||| |||||||| ||||| || | Sbjct 2254 TTCTGGGTGTCCAAAGAATCAAAATAAATGTTGGTAAAGAATAGGATCTCCTCCTCCGGC 2195 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 || ||||||||| |||||| || |||| || |||| Sbjct 2194 AGGGTCAAAAAAGGAAGTATTTAAGTTTCGGTCTGTTA 2157 >seq3016 Length=4215 Score = 123 bits (136), Expect = 6e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| ||||| ||| | || || ||||| || || || ||||||||| | |||||| Sbjct 3659 CAAATTTATAACGTAATTGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTATG 3718 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | || || || |||||||| |||||| | ||||||||||| | || || || || Sbjct 3719 CCCATCATAATTGGTGGTTTCGGGAATTGACTTGTTCCTTTAATATTGGGAGCACCCGAC 3778 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 || | || ||| | | || ||||||| |||||||||||||| |||||| Sbjct 3779 ATAACATTCCCACGAATAAATAATATAAAATTTTGATTACTACCCCCTTCC 3829 >seq7104 Length=1453772 Score = 113 bits (124), Expect = 1e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| || || | ||| || |||| || || | ||||| || | ||| Sbjct 422367 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 422308 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || | |||||||| || || || || |||||||| ||||| || ||| Sbjct 422307 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAAT-TTT 422249 Query 225631 TGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| ||| || || || || || | || || || || ||||| || || ||||| Sbjct 422248 AGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 422189 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||||||||| | ||| | ||||| Sbjct 422188 CAAAGTTTTGACGAAAATCTGCAT 422165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192421708493204