Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq7156 143 6e-29
seq7166 132 1e-25
seq3016 123 6e-23
seq7104 113 1e-19
>seq7156
Length=3407544
Score = 143 bits (158), Expect = 6e-29
Identities = 169/226 (75%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | ||| || | ||||| || || || ||||||| ||||| |||| ||| ||
Sbjct 1526513 ACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGT 1526572
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | || || || |||||||| | || ||||| || || || |||||
Sbjct 1526573 GCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACC 1526632
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
|| ||||||||||| ||| || || ||| |||||||||||| || | || || ||||
Sbjct 1526633 CTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTA 1526691
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
| ||||| ||||| || || || ||||| | ||| | ||||||||
Sbjct 1526692 AGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737
>seq7166
Length=15915
Score = 132 bits (146), Expect = 1e-25
Identities = 132/171 (77%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| || || ||| | || || ||||| || || || ||||||||| | |||||
Sbjct 1682 CAAATTTATAATGTAATTGTAACAGCTCATGCTTTCGTAATAATTTTCTTTATAGTTATA 1741
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || || ||||||||| | ||||||||||| | || ||||| |||
Sbjct 1742 CCAATTATAATTGGTGGATTTGGAAATTGACTTGTTCCTTTAATATTAGGAGCTCCCGAT 1801
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
|| || |||||| | | || |||||||| ||||||||| |||| ||||||
Sbjct 1802 ATAGCATTTCCACGAATGAATAATATAAGATTTTGATTATTACCTCCTTCC 1852
Score = 87.8 bits (96), Expect = 4e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||| || || ||||| ||||| ||||||||||| ||||| |||||||| ||||| || |
Sbjct 2254 TTCTGGGTGTCCAAAGAATCAAAATAAATGTTGGTAAAGAATAGGATCTCCTCCTCCGGC 2195
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769
|| ||||||||| |||||| || |||| || ||||
Sbjct 2194 AGGGTCAAAAAAGGAAGTATTTAAGTTTCGGTCTGTTA 2157
>seq3016
Length=4215
Score = 123 bits (136), Expect = 6e-23
Identities = 130/171 (76%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| ||||| ||| | || || ||||| || || || ||||||||| | ||||||
Sbjct 3659 CAAATTTATAACGTAATTGTAACAGCCCATGCTTTCGTAATAATTTTCTTTATAGTTATG 3718
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| | || || || |||||||| |||||| | ||||||||||| | || || || ||
Sbjct 3719 CCCATCATAATTGGTGGTTTCGGGAATTGACTTGTTCCTTTAATATTGGGAGCACCCGAC 3778
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
|| | || ||| | | || ||||||| |||||||||||||| ||||||
Sbjct 3779 ATAACATTCCCACGAATAAATAATATAAAATTTTGATTACTACCCCCTTCC 3829
>seq7104
Length=1453772
Score = 113 bits (124), Expect = 1e-19
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| ||||||||||| || || | ||| || |||| || || | ||||| || | |||
Sbjct 422367 TGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGT 422308
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| |||||||| || | |||||||| || || || || |||||||| ||||| || |||
Sbjct 422307 TTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAAT-TTT 422249
Query 225631 TGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|||| ||| || || || || || | || || || || ||||| || || |||||
Sbjct 422248 AGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGT 422189
Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713
||||||||| | ||| | |||||
Sbjct 422188 CAAAGTTTTGACGAAAATCTGCAT 422165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192421708493204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |