Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7084 300 2e-76 seq7155 253 3e-62 >seq7084 Length=1258986 Score = 300 bits (332), Expect = 2e-76 Identities = 478/681 (70%), Gaps = 5/681 (1%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||||| ||||| || || | | | || ||||| ||||| | ||| ||||| || Sbjct 1541 TTATCCACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCC 1600 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 || || ||||| |||| ||||||||||| || || || ||| ||| | || Sbjct 1601 GTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTAAGCTTGCCATAGTTGGGC 1660 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || || | || || || | ||||||||| ||||||||||| || || | ||| || ||| Sbjct 1661 TCAGCCACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCGCGATCTGCAGCC 1720 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 ||||| || ||| || | ||| ||||||| ||||||| | | | || | Sbjct 1721 ATTTTAATCGAGGTTTTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTATGTGC 1780 Query 77013 TCTGGAA-GGTTTG--TATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATA 77069 | ||| | || || ||| ||| ||||| || | | | |||||| |||| || ||| Sbjct 1781 TGTGGTATGGATTCAATATGTTGTATGGAGCCGCGACTGGTTATAATATTATTTTTCATA 1840 Query 77070 TCATCATTCCACAATTTCCTCTCTGTTAAAACTC-TAAGGAGATGAGGATTAACTATTTG 77128 ||||||| |||||| | ||| |||| | | | ||| || ||| |||| || | ||| Sbjct 1841 TCATCATCCCACAAACCCAACTCGGTTAGATCGCGTAACAAG-TGATGATTTACAACTTG 1899 Query 77129 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 77188 |||||| || || | || | ||| || ||||||||| || || ||||| | || || Sbjct 1900 AAATTCACCCGAAAGCACACGACGTGTATAAATATTAGAAGTGTACGGTTCAAATGACTC 1959 Query 77189 ATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATT 77248 |||||| |||| |||||||||||| |||||||||||||| || || | || ||| || Sbjct 1960 ATTGTTGCCCATAATTTGAGCAGTTGAAGCAGTTGGCATGGGCGCAAGCAGCAAAGAGTT 2019 Query 77249 TCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGG 77308 | || ||||||| | ||||| || || | | |||||| ||||||||| | || Sbjct 2020 GCGGATACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAGATCAGTTGG 2079 Query 77309 TACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGT 77368 | |||||| | || || |||| ||| || |||||| | ||| || ||||| || Sbjct 2080 TGTTTTATCCCACATGTCATACTGTAAAATACCCTTACTAACGGGTGAACCTTTATACGT 2139 Query 77369 TTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAAT 77428 |||||| | || | | ||||||||| ||| ||||| ||||||||||| || || ||||| Sbjct 2140 TTCATAGGTGCCATATTTTTCAGCTAATTCGCAACTGGCTTCCAATGCGCCATAGTAAAT 2199 Query 77429 TGTTTCGAAAATCTTCTTATT 77449 |||||||| || | || ||| Sbjct 2200 AGTTTCGAATATTTGCTGATT 2220 Score = 233 bits (258), Expect = 3e-56 Identities = 578/873 (66%), Gaps = 8/873 (1%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 || |||||||||| ||||||||| || || ||||| | ||| ||||| || |||||| | Sbjct 2274 ATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGA 2333 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 || || | || ||||| | || | || || ||||| || | || ||||| ||||| Sbjct 2334 TTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAATG 2393 Query 77853 GATTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTG 77911 ||| | |||| | |||||||| | ||| || | || |||||||| Sbjct 2394 CTAAACCAAA-GACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGTTCATATTT 2452 Query 77912 AGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGG 77971 ||||| | ||| || || || ||||| || |||| || || || || | | ||| Sbjct 2453 CAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTGG 2512 Query 77972 GCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCA 78031 ||||| | |||||||| |||| | | || ||||||||||| |||||||||||||| Sbjct 2513 ACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCCA 2572 Query 78032 TAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATC 78091 | ||| || | ||||| || | ||| ||||| || || || || || || | ||| Sbjct 2573 CAAGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGTTTTTCTTCAAATC 2632 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCG 78151 | ||| || | |||||||| |||||||||||| || || || || | | || || || Sbjct 2633 CAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCCG 2692 Query 78152 TTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAAT 78211 |||| | || ||||| | ||| | || | ||||| | |||| |||||| || | Sbjct 2693 TTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCAC 2752 Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 | ||| || ||| | | |||||| || | ||| | | || ||||||| || | Sbjct 2753 CAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTTTGCGCGTATGCAATG 2812 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCA---ACGTTTCAATGT 78328 | | | || || || || || || || || | || || | || |||| Sbjct 2813 TACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCAGATGT 2872 Query 78329 ATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 78388 | | ||||| || || || |||| |||| | || ||||| || |||| ||| Sbjct 2873 ---GAAAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTG 2929 Query 78389 ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | || ||| | ||| || | || ||||| ||||| ||||| | ||| || Sbjct 2930 CGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTCGGA 2989 Query 78449 AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTAC 78508 ||| | ||||| ||||| || |||| || ||||| ||| || || | || || Sbjct 2990 AAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGCAAC 3049 Query 78509 ACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGA 78568 |||||| ||||||||||| |||| ||||| | || ||| | || | ||| || || Sbjct 3050 ACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACTTTAGCAAATAGGA 3109 Query 78569 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 ||| | ||||||||||||||||| || || Sbjct 3110 ACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 >seq7155 Length=3116674 Score = 253 bits (280), Expect = 3e-62 Identities = 387/551 (70%), Gaps = 3/551 (1%) Strand=Plus/Plus Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 ||||||| ||||| |||||||| || ||||||||||| || ||||||| ||||| | Sbjct 2758742 AAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAGT 2758801 Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 || || |||||||| | || ||||||| |||||||| || ||||| || || | || Sbjct 2758802 TCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCA 2758861 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||| ||| ||||| || ||||| ||||| |||||||| | | | || || | Sbjct 2758862 AAACTGCCACTGAAGAAGATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAAG 2758921 Query 48303 CTGGCTTCGTT---GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||||| || | ||||| | |||||||| ||||| |||||| |||| Sbjct 2758922 TTGGCTGACTTCGAGGAAATCCAAGCAAGCGCCCAATCTGCCTTGCGCTTTACGGCAGGC 2758981 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 ||||| ||||||||||| || | | || ||| || || |||| || ||||| Sbjct 2758982 ATTGTCTCTATAGCATTGAATAAGTAATTCCTTTGTTTCGAGTCCTTAATATATGTATCA 2759041 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 ||||| | ||||||||||| || || | ||| || || || || |||||||| || || Sbjct 2759042 ATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAAG 2759101 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | || ||||| | || || ||| || || |||||| | | ||| ||||| || Sbjct 2759102 CAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAACGTTCAACTACATTTTCATTCACA 2759161 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || |||||| || || ||||| ||||| || ||| |||||||| | ||| || | Sbjct 2759162 ATACCATCAGATGCGGCGAAAAAGGCTAACACGTGTGAAATAAAATGTCGTTCATTATCA 2759221 Query 48600 GTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 || || ||| |||| |||||||| || | ||||||||| || ||||||| || Sbjct 2759222 GTGAGACGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAAC 2759281 Query 48660 GATGCCTCTGC 48670 ||||| ||||| Sbjct 2759282 GATGCTTCTGC 2759292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694606575042240