Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7084 291 1e-73 seq7155 260 2e-64 >seq7084 Length=1258986 Score = 291 bits (322), Expect = 1e-73 Identities = 458/651 (70%), Gaps = 5/651 (1%) Strand=Plus/Plus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 |||||||| ||||| | ||| ||||| || || || ||||| |||| ||||||||| Sbjct 1571 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGTAGAAA 1630 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || || || ||| ||| | || || || | || || || | ||||||||| Sbjct 1631 TGTATAGAAGTAAGCTTGCCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTC 1690 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||||||||| || || | ||| || |||||||| || ||| || | ||| ||| Sbjct 1691 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTAATCGAGGTTTTCACGGAAATCTCC 1750 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGGAT 75634 |||| ||||||| | | | || | | ||| | |||| ||| ||| ||||| Sbjct 1751 CAAACAGTTTTGTATAGATCGCGTATGTGCTGTGGTATGGATTCAATATGTTGTATGGAG 1810 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694 |||| | | |||||| |||| || || ||||||| |||||| |||||||| | Sbjct 1811 CCGCGACTGGTTATAATATTATTTTTCATATCATCATCCCACAAACCCAACTCGGTTAGA 1870 Query 75695 ACTC-TAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | | ||| || ||| |||| |||| ||||||||| || || | || | || || || Sbjct 1871 TCGCGTAACAAG-TGATGATTTACAACTTGAAATTCACCCGAAAGCACACGACGTGTATA 1929 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||||||| || || ||||| | || |||||||| |||| |||||||||||||||||| Sbjct 1930 AATATTAGAAGTGTACGGTTCAAATGACTCATTGTTGCCCATAATTTGAGCAGTTGAAGC 1989 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 ||| ||||| || || | || ||| || | || ||||||| | ||||| || || Sbjct 1990 AGTTGGCATGGGCGCAAGCAGCAAAGAGTTGCGGATACCATGTTGCTTTATTTTCTCCTT 2049 Query 75874 TAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 | | |||||| ||||||||| | |||| |||||| | || || |||| ||| Sbjct 2050 CAATTCGGTCCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGTAAAAT 2109 Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 || || ||| | ||| || ||||| ||||| || || || | |||||||||| ||| Sbjct 2110 ACCCTTACTAACGGGTGAACCTTTATACGTTTCATAGGTGCCATATTTTTCAGCTAATTC 2169 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT 76044 |||||| || || || || || || ||||| |||||||| || | || ||| Sbjct 2170 GCAACTGGCTTCCAATGCGCCATAGTAAATAGTTTCGAATATTTGCTGATT 2220 Score = 217 bits (240), Expect = 2e-51 Identities = 580/876 (66%), Gaps = 14/876 (2%) Strand=Plus/Plus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 || || || |||| |||||||||||| || || |||| ||| ||||| || |||||| Sbjct 2274 ATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTACTCTTTCGA 2333 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447 ||||| | || ||||| | | | || || || || || | || ||||| ||||| Sbjct 2334 TTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAATG 2393 Query 76448 GATTTCCAGACGACTCTA-GCTTTTATTATAGATTTGTATCGCTTCTCTCT-TTCATATT 76505 ||| | |||| | ||||||||| | ||| || | || || |||||||| Sbjct 2394 CTAAACCAAA-GACTTTGTGCTTTTATTTTCTTATTGGCACG-TCCTTCCTGTTCATATT 2451 Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 ||||||| ||| || || || ||||| || |||| ||||| ||||| | | | Sbjct 2452 TCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACACTTGTGTG 2511 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| | ||||| || |||| | | || ||||||||||| ||||||||||||| Sbjct 2512 GACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCAGGTATCC 2571 Query 76626 ATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGAT 76685 | | ||| || | ||||| || | | | ||||| || || || || || || | || Sbjct 2572 ACAAGGCATAGAACAAATCTCTGGCACGATGCTCTTCTTTACCAGTGTTTTTCTTCAAAT 2631 Query 76686 CTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTC 76745 | | || || | |||||||| |||||||||||| || || || || | | || || | Sbjct 2632 CCAAAAATTCGAAAATATCAGCATGCCATGGTTCGAGGTAGATGGCAAAGGCGCCGGGCC 2691 Query 76746 GTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAA 76805 ||||| | || ||||| | ||| | || | ||||| | |||| |||||| || | Sbjct 2692 GTTTACCGCACCCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCAACATAGGCA 2751 Query 76806 TAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT---AT 76862 | || || ||| | | |||||| || | ||| | | || ||| || || || Sbjct 2752 CCAAACCATTTGATTTGCTATTTGTACCCGCAATTGCAGTGCCTTTTGCGCGTATGCAAT 2811 Query 76863 -TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCG-TTTCAA 76920 ||| ||| || || || || || ||| || || | ||||| | | | | Sbjct 2812 GTACGTTCAGA----CCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGATGTGCA 2867 Query 76921 TGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACAT 76980 ||| | | || || || || ||| |||| |||| | || ||||| || |||| Sbjct 2868 GATGTGA-AAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAA 2926 Query 76981 TTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTC 77040 ||| | || ||| | ||| || | || ||||| ||||| || || | ||| Sbjct 2927 TTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAACGTTC 2986 Query 77041 AGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGC 77100 ||||| | ||||| ||||| || |||| || || || ||| || || | || Sbjct 2987 GGAAAGCAAGTTGTAAGTTTCGATTGCTGCATCGATGTCTTCGCCATGTATACCGATGGC 3046 Query 77101 GACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTA 77160 |||||||| ||||||||||| ||||| || ||| | || ||| | || | ||| || Sbjct 3047 AACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCATTCAACTTTAGCAAATA 3106 Query 77161 TGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 || ||| | ||||||||||||||||| || || Sbjct 3107 GGAACGTTCAAGTGTTTTAAAACCAAAATAATTATA 3142 >seq7155 Length=3116674 Score = 260 bits (288), Expect = 2e-64 Identities = 481/701 (69%), Gaps = 7/701 (1%) Strand=Plus/Plus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || || ||||| ||||| ||| | || |||||||| || || | || || Sbjct 2758594 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 2758653 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT--CGAT 46581 ||| | ||| || || | || || || ||||| | ||||| || || ||||| | | Sbjct 2758654 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 2758713 Query 46582 GTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCA 46641 ||| | | | ||||||| || || ||||||| ||||| |||||||| || ||| Sbjct 2758714 AATACGCT--CATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCA 2758771 Query 46642 CAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGT 46701 |||||||| || ||||||| ||||| ||| || |||||||| | || ||||||| Sbjct 2758772 CAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAA 2758831 Query 46702 CCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACA 46761 ||||| || || ||||| || || | || ||| ||| ||||| || ||||| || Sbjct 2758832 CCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAGATACCTTCAACG 2758891 Query 46762 GCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--ATGAA-TCCACCTTTGA 46818 || || ||||| | | | || || | |||| || | ||| |||| | Sbjct 2758892 GCAGCAAATGCAATTACACGTTCACCAAAGTTGGCTGACTTCGAGGAAATCCAAGCAAGC 2758951 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 |||||||| ||||| |||||| ||||||||| ||||||||||| || | | || Sbjct 2758952 GCCCAATCTGCCTTGCGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGTAATTC 2759011 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 ||| | || |||| ||||||||| ||||| | ||||||||||| ||||| | Sbjct 2759012 CTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGCACA 2759071 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 || || || || || |||||||| || || || | ||| || || | || || || Sbjct 2759072 TTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCCTGG 2759131 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 || || |||||| | ||| |||||||| || |||||| || || ||||| || || Sbjct 2759132 CAGAAACGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCTAAC 2759191 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || ||| |||||||| | ||||| ||| || ||| |||| |||||||| Sbjct 2759192 ACGTGTGAAATAAAATGTCGTTCATTATCAGTGAGACGTGCCCAATCATCCATATCTTTA 2759251 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || | ||||||||| || |||||||||| || || ||||| Sbjct 2759252 GAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGC 2759292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712870538901120