Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 113 1e-19
seq7156 107 4e-18
seq3141 98.7 2e-15
>seq7104
Length=1453772
Score = 113 bits (124), Expect = 1e-19
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | |||||| |||||||| || |||||||||||||||| | ||| | || |||
Sbjct 422148 AGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCT 422089
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| ||||| ||||| | | || || || | | ||||||||| || |||
Sbjct 422088 TCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCT 422029
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || ||| ||| | || | | || || || || || ||||| || ||
Sbjct 422028 TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTC 421969
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || | ||||||||||||| ||||||||
Sbjct 421968 TTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 421934
Score = 89.7 bits (98), Expect = 1e-12
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| ||||| || || || || || || || |||| | || | |||||
Sbjct 422376 AGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCC 422317
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | ||| || ||||| || | | || || || | | |||||||||||| |||
Sbjct 422316 TCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 422257
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|||||||| ||||||| |||| | | || ||| ||| || || | ||| || |||
Sbjct 422256 TGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 422197
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| | ||| || ||||| | ||||||
Sbjct 422196 TTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 422165
>seq7156
Length=3407544
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | ||| || || ||||| |||||||||||||| |||| || || | ||||||
Sbjct 1526523 AGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCT 1526582
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | ||| ||||||||||| | | ||| || || | | ||| || || || |||
Sbjct 1526583 TCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATACCCTCTTTGTCT 1526642
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| ||||| ||||||| | || | | |||| ||| ||| || || | || || ||
Sbjct 1526643 TGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTGATGGTC 1526702
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111
|| || || | || || ||||| | ||||||||| |||
Sbjct 1526703 TTACCAGTTAAGGTTTTGACGAAAATCTGCATTTTGCCC 1526741
>seq3141
Length=2848
Score = 98.7 bits (108), Expect = 2e-15
Identities = 143/200 (72%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965
||||||||||| || || || || || || || || | |||||||| | ||||| |
Sbjct 1540 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTT--C 1483
Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025
||||||| || || | ||| || || | || ||||||||||| ||||||||||| |
Sbjct 1482 CGGCGAAAATTAGACGCTGTTGATCAGGCGGAATTCCTTCCTTATCTTGAATTTTGGACT 1423
Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085
| ||| || | | || ||| ||| || |||||||| || || || ||||| || |
Sbjct 1422 TAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTACCCGTAAGGG 1363
Query 152086 TCTTCACGAAGACCTGCATT 152105
| || ||||| | ||||||
Sbjct 1362 TTTTTACGAAAATTTGCATT 1343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153714862664386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |