Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq7104 113 4e-20 seq3141 98.7 8e-16 >seq7104 Length=1453772 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||| || || || || ||||| ||||| ||||| || |||| ||||| Sbjct 421934 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 421993 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 |||| || ||| | || ||| || ||| ||||||||||| | ||| ||| Sbjct 421994 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 422053 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | | || | ||| || |||||| ||||||| ||| || ||||||| Sbjct 422054 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 422113 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || |||||||| ||||| || | ||||| || ||||||| Sbjct 422114 AACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCA 422165 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| |||||||| ||||| || |||||||| || |||| || || | Sbjct 422165 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 422224 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| || || ||||| | ||| |||||| Sbjct 422225 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 422284 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| || |||||||| ||||| ||| || || |||| |||||| Sbjct 422285 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 422344 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || ||||||||||| | || | || ||||| Sbjct 422345 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 422391 >seq3141 Length=2848 Score = 98.7 bits (108), Expect = 8e-16 Identities = 179/260 (69%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 111083 TTTATAAGA--GTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTAC 111140 ||| ||||| ||| | |||||||||||| || ||||| | || || || ||||| || Sbjct 1325 TTTGTAAGATTGTTCAGCAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCAC 1384 Query 111141 CGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGA 111200 | || || || ||| || ||| || || || |||||| || || || Sbjct 1385 TCTTGAGGTTGAGCCTTCGGATACTATTGAACATGTTAAGTCCAAAATTCAAGATAAGGA 1444 Query 111201 AGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAA 111260 ||| |||| |||||||| | || |||| || || || |||||||||||| | Sbjct 1445 AGGAATTCCGCCTGATCAACAGCGTCTAATTTTCGCCGGAAAGCAATTGGAAGATGGTCG 1504 Query 111261 AACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCG 111320 || |||| || |||||||| || ||||| |||||| | |||||||| | ||||| | Sbjct 1505 CACATTGGCTGACTATAATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAG 1564 Query 111321 CGGTGGCAATAAATAAACGT 111340 |||||| ||| |||||| Sbjct 1565 AGGTGGC-GCAAAAAAACGT 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421774360855216