Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03]
7,166 sequences; 414,984,608 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7104 109 5e-19
seq7156 89.7 5e-13
seq3141 84.2 2e-11
>seq7104
Length=1453772
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||| |||| || | ||| || ||| ||||||||||| |||||||||||
Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || | ||| ||||| ||||| |||| || ||||| || | |||
Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814
| | ||||| | | ||| |||| |||| || | | || ||| | ||| ||
Sbjct 422271 ATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAAC 422213
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || ||||| ||||||| || || |||||||||||||||
Sbjct 422212 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 422164
>seq7156
Length=3407544
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| ||| || || |||||| || ||||| ||||||||
Sbjct 1526508 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1526567
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || | || || |||||||| |||| |||||||| || | |||
Sbjct 1526568 AAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 1526627
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||| ||||| |||||| |||| || | | ||||| | ||| ||
Sbjct 1526628 ATACCCTCTTTGTCTTGGATTTTA-GCTTTGACATTTTCGATGGTGTCAGAAGGCTCGAC 1526686
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | || || || ||||| || | || || |||||||||||||| ||
Sbjct 1526687 CTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737
>seq3141
Length=2848
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693
|||| || | ||||| | || | ||||| || ||| |||||||| |||||||| |
Sbjct 1572 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 1513
Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753
| ||||| | || || | ||||| |||||||| || || |||||||| || | |
Sbjct 1512 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCG 1453
Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCC 41812
||| | ||||| || ||| |||| | | ||| || ||| || | |||
Sbjct 1452 GAATTCCTTCCTTATCT-TGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCA 1394
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||| | || || || |||||||| || || ||||||||||| |||||
Sbjct 1393 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462262589119200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |