Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20dorsalis_20[refseq_20GCF_5F000789215.1_202014-12-03] 7,166 sequences; 414,984,608 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7104 109 5e-19 seq7156 89.7 5e-13 seq3141 84.2 2e-11 >seq7104 Length=1453772 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| |||| || | ||| || ||| ||||||||||| ||||||||||| Sbjct 422391 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 422332 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||| ||||| ||||| |||| || ||||| || | ||| Sbjct 422331 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 422272 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||| | | ||| |||| |||| || | | || ||| | ||| || Sbjct 422271 ATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATTCTCAATTGTATCGGAAGGCTCAAC 422213 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || ||||| ||||||| || || ||||||||||||||| Sbjct 422212 CTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 422164 >seq7156 Length=3407544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || |||||| || ||||| |||||||| Sbjct 1526508 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 1526567 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | || || |||||||| |||| |||||||| || | ||| Sbjct 1526568 AAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 1526627 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| ||||| |||||| |||| || | | ||||| | ||| || Sbjct 1526628 ATACCCTCTTTGTCTTGGATTTTA-GCTTTGACATTTTCGATGGTGTCAGAAGGCTCGAC 1526686 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || ||||| || | || || |||||||||||||| || Sbjct 1526687 CTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 1526737 >seq3141 Length=2848 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | ||||| | || | ||||| || ||| |||||||| |||||||| | Sbjct 1572 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 1513 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | ||||| | || || | ||||| |||||||| || || |||||||| || | | Sbjct 1512 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCGAAAATTAGACGCTGTTGATCAGGCG 1453 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCC 41812 ||| | ||||| || ||| |||| | | ||| || ||| || | ||| Sbjct 1452 GAATTCCTTCCTTATCT-TGAATTTTGGACTTAACATGTTCAATAGTATCCGAAGGCTCA 1394 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || |||||||| || || ||||||||||| ||||| Sbjct 1393 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 1344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462262589119200