Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1113 143 6e-29 seq2113 96.9 7e-15 seq1581 95.1 3e-14 seq880 93.3 9e-14 seq1337 91.5 3e-13 seq336 91.5 3e-13 >seq1113 Length=4665328 Score = 143 bits (158), Expect = 6e-29 Identities = 304/448 (68%), Gaps = 8/448 (2%) Strand=Plus/Minus Query 281573 AATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGAT 281632 ||| || || |||||||| || ||||||||| | |||||| ||||||| | || || Sbjct 2123195 AATCTTTGTGGACCAACCTGTGCCAATACCATCAGCACCATTCACCAAAACCATTGGTAT 2123136 Query 281633 AATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGAAG 281692 ||| |||| ||| |||| ||||||||| || | |||||||||| ||| ||| | Sbjct 2123135 AATTGGTATATACCATTGTGGTTCAATCTTTTGACCATCATCAACTTCGTACGTCAACAA 2123076 Query 281693 GTTATCATCTGTATCGACGAAAACCTGTCGCGTCTTAGGGTT-CAGTTTCGTGAAGATAT 281751 |||||| | | ||| | |||||||| ||||| || | ||||| |||| Sbjct 2123075 TGGATCATCGGCTGGGTGGAATATGAGTCGCGTCA-AGGGTGACATTAAGGTGAAAATAT 2123017 Query 281752 ACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCA 281811 | | || ||||| ||||||||||||||||| | | || || ||||| ||| Sbjct 2123016 AACGAGCGCTCGCACAATCTTTACCACCCTGCAGACGTGTACCGAATTGACCACGAGGCT 2122957 Query 281812 ACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCT 281871 ||| | ||||| ||||| || ||||||| || |||| ||||| || || ||| Sbjct 2122956 CCAATAAATTAATATTATTTGATCCTACGTAATTTTGCGCCAAATTGACTATGGTAGCCT 2122897 Query 281872 GAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTG 281931 | | || | ||||||||| || |||||| ||| || || ||||| || || | Sbjct 2122896 GCAATGACATCTCACCGTGATGGTAGGCGGACATTTCAGCCACTGAACCAGACAATTGGG 2122837 Query 281932 CTACCTTCACGT--CTGATGTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTG 281989 | || ||||| | | ||||| || ||||||||| | | | | ||||| ||||| Sbjct 2122836 CAACTTTCACCTCACGTTTGTCA--TTACGTTTGAAACAGGTAAACATAACTTTGCGTTG 2122779 Query 281990 AGAAGGCTTGAAACCATCAACGACAGAC 282017 || || |||||||| || ||||| Sbjct 2122778 GCCCGGTTTAAAACCATCCAC--CAGAC 2122753 >seq2113 Length=2115062 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1815093 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTTTTAATCTCAGGGTCGTGGGTTCGAG 1815034 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1815033 CCCCACGTTGGGC 1815021 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 1809448 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1809389 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1809388 CCCACGTTGGGC 1809377 >seq1581 Length=462264 Score = 95.1 bits (104), Expect = 3e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 |||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 282188 CTTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 282129 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 282128 AGCCCCACGTTGGGC 282114 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 191497 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 191556 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 191557 CCCCACGTTGGGC 191569 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 131331 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 131390 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 131391 CCCACGTTGGGC 131402 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 194762 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 194821 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 194822 CCCACGTTGGGC 194833 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 279550 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 279609 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 279610 CCCACGTTGGGC 279621 >seq880 Length=646355 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 537669 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 537610 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 537609 GCCCCACGTTGGGC 537596 >seq1337 Length=514676 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 9678 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9737 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 9738 CCCCACGTTGGGC 9750 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 8256 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8315 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8316 CCCACGTTGGGC 8327 >seq336 Length=3018177 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 2746277 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2746218 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2746217 CCCCACGTTGGGC 2746205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057779192558780