Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2718 224 1e-53 seq2707 114 1e-20 >seq2718 Length=1670031 Score = 224 bits (248), Expect = 1e-53 Identities = 413/602 (69%), Gaps = 10/602 (2%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || |||||||| ||||| | | |||||| || ||| ||||| || || ||| || Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||| | ||| || || || ||| ||||| || ||| ||||| ||| || | | Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 || || || | ||| | ||| | | ||||| ||||||| ||||||||| || || Sbjct 71368 AATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 71309 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 ||| | |||||| |||| || ||||| || ||||||||||| || ||||| || Sbjct 71308 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 71249 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 |||||||| | ||| || |||| || || ||| ||||| ||||| || |||| Sbjct 71248 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACGGC 71189 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGAATCCATTTCTGCA 17156 ||||| || |||| ||||| | | | || | ||| | | |||||| || Sbjct 71188 AGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGA-AGAAATCCAAGCAAGCG 71130 Query 17157 CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA----TTTC 17212 |||| || || || |||||| | | ||| || ||||| || || ||||| || | Sbjct 71129 CCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGCAATTCC 71070 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 | | |||| || | | ||||| ||||| || | || ||| |||||||| || || Sbjct 71069 TTTGTTTCGAGT----CCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGC 71014 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | |||||||| || || |||||||| || ||||| || || || | | ||| |||||| Sbjct 71013 ACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCC 70954 Query 17333 ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392 | |||| ||||| ||| |||||| ||||| || || || ||||||||||| || Sbjct 70953 TGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 70894 Query 17393 AA 17394 || Sbjct 70893 AA 70892 >seq2707 Length=1765650 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 ||||| || ||||||| ||| | |||||||| ||||| |||||||| || || Sbjct 1307280 CCCACATAACCGTTGGAATCTCTGCCATCTAAACTATATTTGTCGTTTAAATAAATTGCA 1307221 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 | || ||| ||| || | | | |||||||||||| ||||||||||| ||| || Sbjct 1307220 ATTTCTAGCGCCTCTTCTGGTGAGTTGGACCATTCCAGTATCTTTTTAGCCCAATACTTA 1307161 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAG 120040 || | |||| |||||||| ||||||||||||| ||| | ||| || || ||||| | | Sbjct 1307160 CGAAGAAATCCGTGCATTTTGCCTTCACGAACCAGTTGTATTTGAGCAGCATTCCAGAGG 1307101 Query 120041 GGATCGTGTGTACGGGCGTGTTCTAA 120066 ||| |||||| || ||||| || Sbjct 1307100 TCATCATGTGTATTTGCTTGTTCGAA 1307075 Score = 107 bits (118), Expect = 2e-18 Identities = 238/349 (68%), Gaps = 10/349 (3%) Strand=Plus/Minus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919 || || |||||||| ||||| |||||||| ||||||||| || || | || | Sbjct 1303412 CCAACATATCCGTTTGGATCTAAACCATCTAAACTGTATTTATCATTCAAAAAAATTGCT 1303353 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 | || || ||| ||||| || ||| |||||||| ||||| ||||| ||||| Sbjct 1303352 GTTTCTAAA-GCAGCATCAGGCGTAGAAGACCACTCCAGTATCTTTTTTGCCCAATACAT 1303294 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 ||| | | ||||||||||| |||||| | | || || || || || |||||||||| Sbjct 1303293 ACGCAGAAAACCATGCATTTTGCCTTCATGTAACAACTGCAGCTGCGCTGCGTTCCATAG 1303234 Query 120040 GGGATCGTGTGTACGGGCGTGTTCTAAACTATACGTATCGTATAGATAG--GGTCGAGTA 120097 | |||||| ||||| || || || ||||| || | ||| || || | || || Sbjct 1303233 GTCATCGTGGGTACGAGCTTGCTC-AAACTCGAC-CAACGTGTAAGCAGGTGAGCGCTTA 1303176 Query 120098 TCCCGTCGATGTTCGTCTAACGTACGTAAAGCCCACGGATGCGTCGACGTAATAGA--AT 120155 || ||||| || ||||| || ||||| | || || | | |||| | Sbjct 1303175 TCTTTACGATGGTCTTCTAAGGTTTTAGCTGCCCAAGCAT--GTAATCCTTTTAGACTGT 1303118 Query 120156 CGTATCGTTTATTATAATAACAAAAGTTATCGGATAATTCCCGTCGTAC 120204 |||| ||| |||||||||||| || ||||| | |||||| |||| ||| Sbjct 1303117 CGTAATGTTCATTATAATAACAGAAATTATCCGCTAATTCACGTCTTAC 1303069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517524212428080