Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2718 224 1e-53
seq2707 114 1e-20
>seq2718
Length=1670031
Score = 224 bits (248), Expect = 1e-53
Identities = 413/602 (69%), Gaps = 10/602 (2%)
Strand=Plus/Minus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| || |||||||| ||||| | | |||||| || ||| ||||| || || ||| ||
Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
||| | ||| || || || ||| ||||| || ||| ||||| ||| || | |
Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| || || | ||| | ||| | | ||||| ||||||| ||||||||| || ||
Sbjct 71368 AATACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCACA 71309
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
||| | |||||| |||| || ||||| || ||||||||||| || ||||| ||
Sbjct 71308 ATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAACC 71249
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097
|||||||| | ||| || |||| || || ||| ||||| ||||| || ||||
Sbjct 71248 ACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACGGC 71189
Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGAATCCATTTCTGCA 17156
||||| || |||| ||||| | | | || | ||| | | |||||| ||
Sbjct 71188 AGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGA-AGAAATCCAAGCAAGCG 71130
Query 17157 CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA----TTTC 17212
|||| || || || |||||| | | ||| || ||||| || || ||||| || |
Sbjct 71129 CCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAGCAATTCC 71070
Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272
| | |||| || | | ||||| ||||| || | || ||| |||||||| || ||
Sbjct 71069 TTTGTTTCGAGT----CCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGC 71014
Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332
| |||||||| || || |||||||| || ||||| || || || | | ||| ||||||
Sbjct 71013 ACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCC 70954
Query 17333 ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392
| |||| ||||| ||| |||||| ||||| || || || ||||||||||| ||
Sbjct 70953 TGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 70894
Query 17393 AA 17394
||
Sbjct 70893 AA 70892
>seq2707
Length=1765650
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920
||||| || ||||||| ||| | |||||||| ||||| |||||||| || ||
Sbjct 1307280 CCCACATAACCGTTGGAATCTCTGCCATCTAAACTATATTTGTCGTTTAAATAAATTGCA 1307221
Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980
| || ||| ||| || | | | |||||||||||| ||||||||||| ||| ||
Sbjct 1307220 ATTTCTAGCGCCTCTTCTGGTGAGTTGGACCATTCCAGTATCTTTTTAGCCCAATACTTA 1307161
Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAAG 120040
|| | |||| |||||||| ||||||||||||| ||| | ||| || || ||||| | |
Sbjct 1307160 CGAAGAAATCCGTGCATTTTGCCTTCACGAACCAGTTGTATTTGAGCAGCATTCCAGAGG 1307101
Query 120041 GGATCGTGTGTACGGGCGTGTTCTAA 120066
||| |||||| || ||||| ||
Sbjct 1307100 TCATCATGTGTATTTGCTTGTTCGAA 1307075
Score = 107 bits (118), Expect = 2e-18
Identities = 238/349 (68%), Gaps = 10/349 (3%)
Strand=Plus/Minus
Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATA-CA 119919
|| || |||||||| ||||| |||||||| ||||||||| || || | || |
Sbjct 1303412 CCAACATATCCGTTTGGATCTAAACCATCTAAACTGTATTTATCATTCAAAAAAATTGCT 1303353
Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979
| || || ||| ||||| || ||| |||||||| ||||| ||||| |||||
Sbjct 1303352 GTTTCTAAA-GCAGCATCAGGCGTAGAAGACCACTCCAGTATCTTTTTTGCCCAATACAT 1303294
Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039
||| | | ||||||||||| |||||| | | || || || || || ||||||||||
Sbjct 1303293 ACGCAGAAAACCATGCATTTTGCCTTCATGTAACAACTGCAGCTGCGCTGCGTTCCATAG 1303234
Query 120040 GGGATCGTGTGTACGGGCGTGTTCTAAACTATACGTATCGTATAGATAG--GGTCGAGTA 120097
| |||||| ||||| || || || ||||| || | ||| || || | || ||
Sbjct 1303233 GTCATCGTGGGTACGAGCTTGCTC-AAACTCGAC-CAACGTGTAAGCAGGTGAGCGCTTA 1303176
Query 120098 TCCCGTCGATGTTCGTCTAACGTACGTAAAGCCCACGGATGCGTCGACGTAATAGA--AT 120155
|| ||||| || ||||| || ||||| | || || | | |||| |
Sbjct 1303175 TCTTTACGATGGTCTTCTAAGGTTTTAGCTGCCCAAGCAT--GTAATCCTTTTAGACTGT 1303118
Query 120156 CGTATCGTTTATTATAATAACAAAAGTTATCGGATAATTCCCGTCGTAC 120204
|||| ||| |||||||||||| || ||||| | |||||| |||| |||
Sbjct 1303117 CGTAATGTTCATTATAATAACAGAAATTATCCGCTAATTCACGTCTTAC 1303069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517524212428080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |