Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq314 156 3e-33 >seq314 Length=932230 Score = 156 bits (172), Expect = 3e-33 Identities = 412/624 (66%), Gaps = 4/624 (1%) Strand=Plus/Plus Query 101643 TTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACAT 101702 ||||||||| | ||| |||||| ||||| ||| | || ||||| |||| || Sbjct 384027 TTGGAAACGCCCGAGGTTCTCGCGTTAACTGTTCTTTTAATGCTTCAATATGATTATTAT 384086 Query 101703 AGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAG 101762 ||| || ||||| || | ||| |||| || || || || |||| ||| | ||||| Sbjct 384087 AGACATGTGCATCGCCCAAAGTGTGGACGAAATCCCCTGGTCGGAGATCAGTAATATGAG 384146 Query 101763 CAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATAT 101822 ||||||| | || | | || || ||||| |||||||| || || || ||||||| Sbjct 384147 CAATCATATAGGTAAGCAAAGCGTACGAGGCAATATTAAATGGTACACCCAATCCCATAT 384206 Query 101823 CAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTA 101882 | || | ||| || | |||||| || | || ||||| ||| ||||||| | Sbjct 384207 CGGCACTGCGTTGGTATAATTGACAAGATAACTCTCCATTGGCAACAAAAAATTG-TGCA 384265 Query 101883 ATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATT 101941 | || ||||||||| || | | |||||| ||| || || | |||||||||| ||||| Sbjct 384266 AGACAATGACAAGGTGGTAGCGCCATTTGAGGGATATCGACAGGATTCCAAGCAGACATT 384325 Query 101942 AACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCA 102001 | || | || ||| | || || || | ||||| ||||| | || | | ||| || Sbjct 384326 ATAATACGTCGATCATTTGGATTATTTCTGATAGTGTCAATTACTTGCTGAAGTTGATCT 384385 Query 102002 ACTCCTTCTCCTTTATAATCGCGCCCAACACCTT-TATATTCTGCTCCGAAATGCCTCCA 102060 | || || |||| ||| | || || || | || | || || ||||| | ||| Sbjct 384386 ATACCCTCATCTTTGTAA-CTGTCCTTGCAGTTTCTGTACTTGGCCCCAAAATGACGCCA 384444 Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120 |||||| ||||| || || || ||||| ||||| || || ||| |||| || ||| || Sbjct 384445 CTGAAAACCATAAACTGGGCCTAGATCACCTTCCTCCCTATCAGAAAACCCGCATTTGTC 384504 Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTT 102180 ||| || ||| | || | ||||| ||||| | | || || ||| Sbjct 384505 TAAGAACTCCCTATTACTGTTTCCGTCCCATATGTGAATATTTTTTTCTTGAAGTATTTT 384564 Query 102181 GCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATAC 102240 ||| || || | |||||| | || |||||| | ||| | | ||||||||| Sbjct 384565 AGCGTCTGTTTTACCATGAACAAACCATAGCAATTCTTCGGCGACAGCACGCCAAAATAC 384624 Query 102241 TCTCTTAGTAGTTAAAAGTGGAAA 102264 || ||| ||||||| | |||||| Sbjct 384625 TCGCTTTGTAGTTAGTAATGGAAA 384648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361236644511806