Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3107 499 4e-136 seq2718 271 9e-68 >seq3107 Length=1323484 Score = 499 bits (552), Expect = 4e-136 Identities = 1241/1857 (67%), Gaps = 44/1857 (2%) Strand=Plus/Plus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||||||||| | ||| ||||| ||||| || ||||| |||| ||| | ||| Sbjct 934448 GCTGGTTTCGTACGCAAATAATACATGCCCGTCTTGAGACCTGCCTTCCAGCCGAAGAAA 934507 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 || ||| || || || ||| | || || || | || || || | || |||||| Sbjct 934508 TGTATAGAAGTAAGCTTACCATAGTTGGGCTCAGCCACGTGTATGTTGAACGACTGACTT 934567 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGAATTTC 53007 ||||||||||| || || | |||||||||||||| || ||| || || | ||| || Sbjct 934568 TGATCGATGAATGCACCGCGATCTGCAGCCATTTTGATTGAT-GTTTTCACGGAAATCTC 934626 Query 53008 CCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAA-GGTTTG--TATTCTGAATAG 53063 ||||| |||||| || | |||| || | | | ||| | || || |||| || || | Sbjct 934627 CCAAACAGTTTTGTATAGATCGCGTA-TGTGCTGTGGTATGGATTCAATATTTTGTATGG 934685 Query 53064 ATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 53123 | || | | ||||| ||||||| || ||||||| ||| || |||||||| Sbjct 934686 AGCCGCGACTGGTTATAATATTATTCTTCATATCATCATCCCACAAACCCAACTCGGTTA 934745 Query 53124 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 53183 | | | | | || |||| || ||||||||||| || || | || | || || | Sbjct 934746 GATCGCGCAACAAGTGATGATTTACAACTTGAAATTCACCTGAAAGCACACGACGTGTAT 934805 Query 53184 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 53243 ||||||| || || ||||| | |||||||| || |||| |||||| || ||||| | Sbjct 934806 AAATATTGGAAGTGTATGGTTCAAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAG 934865 Query 53244 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTC--TGATTTTATC 53301 |||| ||||| || || | || |||| || | | ||| ||||| | ||||| || Sbjct 934866 CAGTTGGCATGGGCGCAAGCAGTAAAGAGTTGCGGACACC--ATGTTGCTTTATTTTCTC 934923 Query 53302 TTTTAGA--GGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGT 53359 || | ||| ||||||||||||||| | ||| ||| Sbjct 934924 CTTCAATTCGGT--CCAATTCCAAAGATCAGTTGGTGTTTTATCCCACATGTCATACTGT 934981 Query 53360 AGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCT 53419 |||||||| ||||| || || ||| | || || || || || || || || ||| Sbjct 934982 AGAATACCCTTACTAACGGGTGAACCTTCGTAAGTTTCATAGGGGCCAAGTTTTTCGGCT 935041 Query 53420 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 53479 | ||| ||||| || || || || || || ||||| |||||||| || | || ||| | | Sbjct 935042 AATTCGCAACTAGCTTCCAAGGCGCCATAGTAAATTGTTTCGAATATTTGCTGATTCAAA 935101 Query 53480 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 53539 | |||||| || || |||||||| | | ||| || ||||| || || || Sbjct 935102 AGTAATGCTTCTTCACTTTCGTATGGATAACGCATTAAAATTAAAGCGTCAGCAAAACCC 935161 Query 53540 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA--GCTTCTGGAATAG 53597 || || ||||||||||| || | |||||| ||| || |||| || || || | | Sbjct 935162 TGTACTCCAATACCGATGGGACGATGTCTGAAATTCGA--TTTCCTTGCCTCCGGTAAGG 935219 Query 53598 GATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCT 53657 |||||| |||||| ||||| |||||||| | || | || |||| || || | Sbjct 935220 GATAATGATTAATGTCTATTATTTTATTCAAATTACGTGTAACGGTTTTGGTGACCTCTT 935279 Query 53658 TCAGTTTGAGAAAATCAAA---TTGTCCATCTATTACAAACATGTTCAATGCAATAGATG 53714 | || ||| || | || | | | | |||||||| ||||| || || || | Sbjct 935280 TGAGGCGCTTAAAGTCGTACGTTTTTTCGGGTGTGACAAACATATTCAACGCGATTGAAG 935339 Query 53715 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGAT 53774 ||| || || || |||||||||| || | | ||||| | || || || || | || Sbjct 935340 CCAAGTTGCACACAGCTACCTCATCAGGTGCTGAATATTCCACAATTTCGGTACATAAAT 935399 Query 53775 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 53834 |||||||||| || || || | ||| ||||||||||||||| ||||| ||||| |||| Sbjct 935400 TACTACACTTAATTGTACCAACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTAT 935459 Query 53835 AAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACAC 53894 | | ||| |||| || || || || | || ||||| ||||| ||| | | ||| Sbjct 935460 ACAACATGTATGGTGTGCCGGTCTCCACTTGCGATTCAATAAT-GCTAAACCAAAGACTT 935518 Query 53895 -GAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTC 53952 | || |||| | | ||| | | || || || || | ||| ||| ||| ||| Sbjct 935519 TGTGCTTTTACTTTCTTATTAGCACGTCCTTCCTGTT-CATATTTCAGATATAATTTTTC 935577 Query 53953 AAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 54012 ||||| || ||||| || | | | || ||||| | | |||||||| | |||||| Sbjct 935578 GAACTCTTCACCCCATACTTCATGTAGACCGGGACACTTGTGTGGACACATTAGCGACCA 935637 Query 54013 CTCTCCGTCATC--CTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| |||| |||| || ||||||||||| |||||||| ||||| | ||| ||| Sbjct 935638 GTCT---TCATTGGCTTCTACACGTTTCATAAATAGATCAGGTATCCACAAAGCATAAAA 935694 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | |||||||| | ||| || || || || || || || || | ||| | || | Sbjct 935695 CAAATCTCTGGCGCGATGCTCTTCTTTCCCAGTGTTTTTCTTCAAATCCAAAAATTGGAA 935754 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 |||||||| |||||| ||||||| ||| |||| | | || || ||||| || || Sbjct 935755 AATATCAGCATGCCATGGTTCCAGGTAGATGGCAAATGCGCCTGGACGTTTACCGCCACC 935814 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||||| | || | || ||||| | |||| |||||| || | | ||| || || Sbjct 935815 TTGATCCACATAGCGTGCTACATTATTGAACACTCGCAACATAGGCACCAAACCGTTTGA 935874 Query 54250 TGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAAT---AT-TACTAATTGAT 54304 || ||||| || |||| | | || | || | ||||| || || ||| || Sbjct 935875 TGTGCCATTTGTACCCGCAATTGCAG-TGCCTTTTGCACGTATGCAATGTAC--GTT--C 935929 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG-TATCATAGAT 54363 ||||| || ||||| || ||| || || ||||| ||| | | | || | | | | || Sbjct 935930 AGACCAATACCCCCAGCAGATTTGGAAATCAATGCACATTGATGTGCCGATGTGA-AAAT 935988 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 54423 || || || ||| |||| |||| | |||||||| || |||| ||| | | | Sbjct 935989 CCCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTGCTT 936048 Query 54424 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 54483 || | ||| |||| || |||||||| |||||||| | ||| ||||| | || Sbjct 936049 GGTGGCAGCAGCGAATAGCGTTGGAGAAGCATGCGTAAAATAACGTTCGGAAAGCAAGTT 936108 Query 54484 GTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 54543 ||| || ||||| |||| ||||| || ||| || || | || ||||||||||| Sbjct 936109 GTATGTTTCGATTGCTGCATCTATGTCTTCGCCATGTATACCGATGGCAACACGCATTAA 936168 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||| ||||| |||| ||||| || ||| |||| ||| ||||| ||||| ||| | Sbjct 936169 CATATGCTGTGGTCGCTCAACAATTTTGCCATTTAATTTTAGCAAATAGGAACGTTCAAG 936228 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 |||||||||||||||||| || || ||| || || || |||||||| | ||||| Sbjct 936229 AGTTTTAAAACCAAAATAATTATAACCAAAATCGCGGTCATAAATAATGGCAGAGTT 936285 >seq2718 Length=1670031 Score = 271 bits (300), Expect = 9e-68 Identities = 394/554 (71%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175 |||||||| ||||||||||||||||| || || || || ||||| |||| ||||| Sbjct 71341 TAAATGTTGGAACATCAAACATGCGAAGTCACAATGAAGTCCCTCATCTCGTGAAATTAG 71282 Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||| |||||||| || | || ||||||| ||||| || |||||||| || || || || Sbjct 71281 TTCATTGGAAAATGTCAAGCCTGGCATTAAACCACGTTTCTTAAGCCAGAAGATCGAAGC 71222 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 ||| ||| |||||||| ||||| || || ||||| ||||| | | ||| ||| | Sbjct 71221 AAAACTGCCACTGAAGAAAATACCTTCAACGGCAGCAAATGCAATTACACGTTCACCAAA 71162 Query 24296 ACCGGCG--CTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 ||| || | | | |||| | |||||||| ||||| ||||| ||| Sbjct 71161 GTTGGCCGACTTCGAAGAAATCCAAGCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGG 71102 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 |||||||||||||||||| || | | || ||| || || |||| ||||||||| Sbjct 71101 CATTGTCTCTATAGCATTGAATAAGCAATTCCTTTGTTTCGAGTCCTTAATATATGTATC 71042 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 ||| || | ||||||||||| ||||| | || || || || ||||||||||| ||||| Sbjct 71041 AATTAATATGCTATACATTTCAGAATGCACATTCTCCATCGCAATTTGAAATCCATAGAA 70982 Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 || | ||||| || | || ||||| || || ||||| ||| |||||||||||| Sbjct 70981 GCAACGTGCCTCTGTCACTTGGACTTCCTGGCAGAAGCGTTCAACTACATTTTCATTCAC 70922 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 || || ||| || || ||||| || || || || ||||||| | ||| | Sbjct 70921 AATACCATCAGATGCGGCGAAAAAGGCTAACACGTGGGAAATAAAATGTCGTTCATTATC 70862 Query 24593 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 || || |||||||| ||||||||||| | ||| ||||| || |||||||| || Sbjct 70861 AGTGAGGCGTGCCCAATCATCCATATCTTTAGAAAGATCTACTTCCTCTACTGTCCAGAA 70802 Query 24653 TGATGCCTCTGCCT 24666 ||||| ||||||| Sbjct 70801 CGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593697064454880