Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2718 185 9e-42
seq603 113 5e-20
seq1558 109 6e-19
>seq2718
Length=1670031
Score = 185 bits (204), Expect = 9e-42
Identities = 375/554 (68%), Gaps = 2/554 (0%)
Strand=Plus/Plus
Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714
|||| || || ||||||||||| || ||||| || || || || || || | | || |
Sbjct 70788 AGGCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 70847
Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774
||| ||| | | || || || || ||||| || |||||| | |||||||||||||
Sbjct 70848 GGGCACGCCTCACTGATAATGAACGACATTTTATTTCCCACGTGTTAGCCTTTTTCGCCG 70907
Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834
| || || || || || || ||| | || || || ||| ||||| || || |||
Sbjct 70908 CATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGCTTCTGCCAGGAAGTCCAAGTGA 70967
Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894
| ||||| || |||||||| || ||||| || || |||||||| ||||| || |||||||
Sbjct 70968 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAATGT 71027
Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954
|| | | || || || || | ||| | | | | | || || || |
Sbjct 71028 ATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTGCTTATTCAATG 71087
Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013
| || ||||| ||||| ||| |||| | ||||| || |||||||| ||||| |
Sbjct 71088 CTATAGAGACAATGCC-TGCCGTAAAGCGTAAGGCAGATTGGGCGCTTGCTTGGATTTCT 71146
Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073
| |||| ||| || || || | | || || || ||||| || || | |||
Sbjct 71147 TCGAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATTTTC 71206
Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133
|| |||||||| || | || || ||||| |||||||| || | ||||| ||| ||
Sbjct 71207 TTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTG 71266
Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193
|| || ||| || || || || | || ||||| || ||||| ||||| || ||||||
Sbjct 71267 ACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTTG 71326
Query 117194 CTGTTCAAGCATTT 117207
||||| | |||||
Sbjct 71327 ATGTTCCAACATTT 71340
>seq603
Length=780983
Score = 113 bits (124), Expect = 5e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| || || | || ||||| |||||||| | || || ||| |
Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||| | | ||| | || | || |||| |||||||| || |||||| | ||
Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 745686
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| ||||| | |||| || || ||||| ||||| |||| ||||| || ||| |||
Sbjct 745687 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 745746
Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893
||||||||||||||| | || || |||
Sbjct 745747 AACATCCAGAAGGAGTCTACACTTCAT 745773
Score = 105 bits (116), Expect = 7e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| | ||||| ||||||||||| | || || || | ||
Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||| | ||||||| || || || || |||||| | || ||
Sbjct 745858 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 745917
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | || | ||| ||||||||| |||| || | ||||| || |||||| ||
Sbjct 745918 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 745977
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907
|| |||||||| |||| || ||| |||| | |||||
Sbjct 745978 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTT 746015
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||||||||||||| | || ||||| || |
Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | || ||||| ||||| || | || ||
Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | || | || ||||| || || || || | || || | |||||||||
Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|| |||||||| | || || ||| | |||
Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTG 747762
>seq1558
Length=2163639
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| ||||| | || || || ||||| ||| | || ||||| |
Sbjct 2033945 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAGCCT 2034004
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | ||| |||| | ||||| | || ||||||||||||||| | ||
Sbjct 2034005 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCAGAT 2034064
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| || || | |||| ||| || || || |||| || | |||||| | |||||||
Sbjct 2034065 CAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTAC 2034124
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||| |||||| | || || ||| | || ||||
Sbjct 2034125 AACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCG 2034162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515197908566560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |