Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2718 185 9e-42 seq603 113 5e-20 seq1558 109 6e-19 >seq2718 Length=1670031 Score = 185 bits (204), Expect = 9e-42 Identities = 375/554 (68%), Gaps = 2/554 (0%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || ||||||||||| || ||||| || || || || || || | | || | Sbjct 70788 AGGCAGAAGCATCGTTCTGGACAGTAGAGGAAGTAGATCTTTCTAAAGATATGGATGATT 70847 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||| ||| | | || || || || ||||| || |||||| | ||||||||||||| Sbjct 70848 GGGCACGCCTCACTGATAATGAACGACATTTTATTTCCCACGTGTTAGCCTTTTTCGCCG 70907 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | || || || || || || ||| | || || || ||| ||||| || || ||| Sbjct 70908 CATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGCTTCTGCCAGGAAGTCCAAGTGA 70967 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||| || ||||| || || |||||||| ||||| || ||||||| Sbjct 70968 CAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAATGT 71027 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 || | | || || || || | ||| | | | | | || || || | Sbjct 71028 ATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTGCTTATTCAATG 71087 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 | || ||||| ||||| ||| |||| | ||||| || |||||||| ||||| | Sbjct 71088 CTATAGAGACAATGCC-TGCCGTAAAGCGTAAGGCAGATTGGGCGCTTGCTTGGATTTCT 71146 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | |||| ||| || || || | | || || || ||||| || || | ||| Sbjct 71147 TCGAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATTTTC 71206 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 || |||||||| || | || || ||||| |||||||| || | ||||| ||| || Sbjct 71207 TTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTTG 71266 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || || ||| || || || || | || ||||| || ||||| ||||| || |||||| Sbjct 71267 ACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTTG 71326 Query 117194 CTGTTCAAGCATTT 117207 ||||| | ||||| Sbjct 71327 ATGTTCCAACATTT 71340 >seq603 Length=780983 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || | || ||||| |||||||| | || || ||| | Sbjct 745567 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 745626 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | ||| | || | || |||| |||||||| || |||||| | || Sbjct 745627 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 745686 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| | |||| || || ||||| ||||| |||| ||||| || ||| ||| Sbjct 745687 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 745746 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||||||||| | || || ||| Sbjct 745747 AACATCCAGAAGGAGTCTACACTTCAT 745773 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | ||||| ||||||||||| | || || || | || Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| | ||||||| || || || || |||||| | || || Sbjct 745858 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 745917 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||||||| |||| || | ||||| || |||||| || Sbjct 745918 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 745977 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 || |||||||| |||| || ||| |||| | ||||| Sbjct 745978 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTT 746015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||||||||||||| | || ||||| || | Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | || ||||| ||||| || | || || Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || ||||| || || || || | || || | ||||||||| Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || |||||||| | || || ||| | ||| Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTG 747762 >seq1558 Length=2163639 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||| | || || || ||||| ||| | || ||||| | Sbjct 2033945 AAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAGCCT 2034004 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||| | ||||| | || ||||||||||||||| | || Sbjct 2034005 TCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCAGAT 2034064 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || | |||| ||| || || || |||| || | |||||| | ||||||| Sbjct 2034065 CAACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTAC 2034124 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| |||||| | || || ||| | || |||| Sbjct 2034125 AACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCG 2034162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515197908566560