Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq314 154 2e-32 seq2605 143 4e-29 seq603 131 3e-25 seq1558 96.9 5e-15 seq2707 86.0 9e-12 >seq314 Length=932230 Score = 154 bits (170), Expect = 2e-32 Identities = 311/456 (68%), Gaps = 9/456 (2%) Strand=Plus/Plus Query 205359 TAATTGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATG 205418 ||| |||| ||||||| | | |||||||||| ||| | |||||||| || | | | || Sbjct 384052 TAACTGTTCTTTTAATGCTTCAATATGATTATTATAGACATGTGCATCGCCCAAAGTGTG 384111 Query 205419 AATAAATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATA 205478 | || || |||| | || ||| | ||| ||||||||||| || | ||| || Sbjct 384112 GACGAAATCCCCTGGTCGGAGATCAGTAATATGAGCAATCATATAGGTAAGCAAAGCGTA 384171 Query 205479 ACTAGCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACA 205538 |||| ||||||||||||||| || |||||||| || | ||| || | ||||| Sbjct 384172 CGAGGCAATATTAAATGGTACACCCAATCCCATATCGGCACTGCGTTGGTATAATTGAC- 384230 Query 205539 TGTAAGATATTTAT-TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597 |||||| | | ||| ||| ||||||| ||| ||||||||||||||||| Sbjct 384231 ---AAGATAACTCTCCATTGGCAACAAAAAATTGTGCAAGACAATGACAAGGTGGTAGCG 384287 Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtt 205657 |||| | | ||| | ||||||||| || | | ||| ||| || | | || | Sbjct 384288 CCATTTGAGGGATATCGACAGGATTCCAAGCAGACATTATAATACGTCGATCATTTGGAT 384347 Query 205658 tattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAA-TTT 205716 ||||| | || | | || | || | |||||| | || | || | | ||| | | Sbjct 384348 TATTTCTGATAGTGTCAATTACTTGCTGAAGTTGATCTATACCCTCATCTTTGTAACTGT 384407 Query 205717 GTATCCA-TATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACC 205775 | || | || | || || || |||||||||||||| ||||||||||||||||| || Sbjct 384408 CCTTGCAGTTTC--TGTACTTGGCCCCAAAATGACGCCACTGAAAACCATAAACTGGGCC 384465 Query 205776 TAAATCACCTTCTTTTCTATCATTAAAACCACGTTT 205811 || ||||||||| | |||||| ||| || | ||| Sbjct 384466 TAGATCACCTTCCTCCCTATCAGAAAACCCGCATTT 384501 >seq2605 Length=276952 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||||||| || |||| || || || || || || || ||| | ||| |||| | Sbjct 241895 CAATGCAAATTTTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTT 241954 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| || | || |||||||||||||| ||||| || || ||||||| Sbjct 241955 CGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCTGATC 242014 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| | || |||||||| ||||| ||||| || ||| |||| ||||| | || |||| Sbjct 242015 AACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATA 242074 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||||| ||||| || || |||||||| || | ||| | ||||||| Sbjct 242075 ATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 242123 >seq603 Length=780983 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | ||| |||| | Sbjct 745798 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 745857 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| |||||||||||||| ||||| || || || |||||| Sbjct 745858 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 745917 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||| || |||||| | || ||| | || |||||| Sbjct 745918 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 745977 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||| | ||||| ||| |||| ||||| |||||||| Sbjct 745978 ATTCAGAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 746027 Score = 104 bits (114), Expect = 4e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || |||||||| || || | || | || | Sbjct 747553 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCA 747612 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || |||||||||||||| || ||||| |||||| Sbjct 747613 GATACCATTGAGAATGTTAAGGCTAAGATCCAAGATAAAGAAGGCATTCCACCAGATCAA 747672 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || || ||| | |||||| | || || || || || ||| Sbjct 747673 CAACGTTTGATTTTTGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 747732 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 || || || ||||| || | |||||||| ||||| | || || || Sbjct 747733 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 747779 >seq1558 Length=2163639 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || |||| || || || || || ||||| | || | Sbjct 2033947 AATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATTACCTTAGAGGTCGAGCCTTC 2034006 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || ||| | ||| ||||| ||||||||||| || || || || ||||| Sbjct 2034007 TGACACCATCGAAAATGTCAAAGCTAAAATCCAAGATAAAGAGGGCATCCCCCCAGATCA 2034066 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||| ||||| || ||| |||| || || || || || Sbjct 2034067 ACAGCGTTTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 2034126 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | ||||||||| | ||| | || |||||||| Sbjct 2034127 CATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 2034177 >seq2707 Length=1765650 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 202758 CAACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTG 202817 ||||||| |||||||| |||||| | |||| |||| || | ||||| ||||| |||| Sbjct 1303578 CAACATCGAATTTACGCTGACATCCCTTATAATTCATGTAACGTATTTTTCCAAAAATTG 1303519 Query 202818 GTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATACATCC 202869 ||| ||| |||| || |||||| | || | ||||||||||||||| || Sbjct 1303518 GTCGTTCCGCCCATCCTTGATCATGCACGCCCCCAATTGACCACATACAACC 1303467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755424780780800