Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1558 120 3e-22 seq2605 100 2e-16 seq603 100 2e-16 >seq1558 Length=2163639 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| || ||||| ||||| |||||||| ||| || ||||| ||| || Sbjct 2034156 ACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 2034097 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| ||| |||| | |||||| ||||| || || |||||||| || ||| Sbjct 2034096 AATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCTTGG 2034037 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | ||||| |||||| | ||||||||| | ||| | || || Sbjct 2034036 ATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTCTTA 2033977 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| || ||||||||||| Sbjct 2033976 CCAGTTAAGGTTTTGACGAAAATCTGCAT 2033948 >seq2605 Length=276952 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || || | |||||||||||| ||||| || || || || ||||| ||| || Sbjct 242105 ACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCC 242046 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| || | || |||||||| ||||| || || || || ||||| ||| | Sbjct 242045 AATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGAATTCCTTCCTTATCTTGA 241986 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||||| ||||| | || |||| ||| ||||| | || | || || Sbjct 241985 ATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACCTCAAGAGTGATGGTCTTA 241926 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || |||||||| ||||| ||||| ||| Sbjct 241925 CCCGTAAGGGTTTTTACGAAAATTTGCATTGCT 241893 >seq603 Length=780983 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | || || || | || || || || ||||| || || ||| Sbjct 746026 TACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGG 745967 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| |||||| | |||||| |||||| | || | ||| || ||||| || | Sbjct 745966 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGG 745907 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| |||||| ||| || | || | ||| || | ||| | Sbjct 745906 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 745847 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | ||||| || |||| |||||| || |||||||||||| Sbjct 745846 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||||||| || || |||||||||||| || |||||| || || Sbjct 745778 ACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCTTCC 745719 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || ||||| || || |||| | ||| || ||||| || || || || || |||||| | Sbjct 745718 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCTTGA 745659 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || |||||| | ||| | || || | || | || ||||| | || | || || Sbjct 745658 ATCTTAGCTTTAACATTTTCAATAGTATCGGATGGT-TCAACCTCCAGAGTGATGGTCTT 745600 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || || ||||| Sbjct 745599 GCCAGTCAAGGTCTTCACGAAGATTTGCAT 745570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433812920159752