Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2707 93.3 8e-14 >seq2707 Length=1765650 Score = 93.3 bits (102), Expect = 8e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 189420 AACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGA 189479 || ||||| |||| | || |||||| || ||||| || | ||||| || |||| Sbjct 1307073 AATTCGAACAAGCAAATACACATGATGACCTCTGGAATGCTGCTCAAATACAACTGGTTC 1307132 Query 189480 GAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGA 189539 | ||||| |||||||| | ||| | || | |||||||||||| |||||||| |||||| Sbjct 1307133 GTGAAGGCAAAATGCACGGATTTCTTCGTAAGTATTGGGCTAAAAAGATACTGGAATGGT 1307192 Query 189540 CTAGAACACCTGAAGACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACTA 189598 | | |||| ||||| || | || || | || ||||| ||| |||| || || Sbjct 1307193 CCAACTCACCAGAAGAGGCGCT-AGAAATTGCAATTTATTTAAACGACAAATATAGTTTA 1307251 Query 189599 GACGGCACGGATCCTAACGGATACGTAGGT 189628 || |||| ||| | ||||| || || ||| Sbjct 1307252 GATGGCAGAGATTCCAACGGTTATGTGGGT 1307281 Score = 86.0 bits (94), Expect = 1e-11 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 ||||||||||| | || ||||| || | ||||| ||||||||| ||||| | || Sbjct 1303234 CTATGGAACGCAGCGCAGCTGCAGTTGTTACATGAAGGCAAAATGCATGGTTTTCTGCGT 1303293 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTAT 189568 ||||||||||| || |||||||| || ||| || || ||||| | ||||| || | Sbjct 1303294 ATGTATTGGGCAAAAAAGATACTGGAGTGGTCTTCTACGCCTGATGCTGCTTT-AGAAAC 1303352 Query 189569 AG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGG 189627 || || | |||||| | || ||| |||| || ||||| |||||||| || || Sbjct 1303353 AGCAATTTTTTTGAATGATAAATACAGTTTAGATGGTTTAGATCCAAACGGATATGTTGG 1303412 Query 189628 T 189628 | Sbjct 1303413 T 1303413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923158648892240