Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq636 116 4e-21
seq1581 98.7 1e-15
seq2674 96.9 4e-15
seq958 96.9 4e-15
seq115 96.9 4e-15
seq880 95.1 1e-14
seq425 93.3 5e-14
>seq636
Length=779586
Score = 116 bits (128), Expect = 4e-21
Identities = 76/84 (90%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|| ||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 438978 ATCAAAAAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 438919
Query 60114 TACTCACCACTATACTACCGAGGA 60137
|||| |||||||||||||||||||
Sbjct 438918 TACTGACCACTATACTACCGAGGA 438895
Score = 104 bits (114), Expect = 3e-17
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
||||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 326346 AAAAATTCACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 326405
Query 60116 CTCACCACTATACTACCGAGGA 60137
|| |||||||||||||||||||
Sbjct 326406 CTGACCACTATACTACCGAGGA 326427
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 366427 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 366368
Query 60126 TACTACCGAGGATT 60139
||||| ||||||||
Sbjct 366367 TACTATCGAGGATT 366354
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 322694 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 322635
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 322634 TACTATCGAGGAT 322622
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 764866 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 764807
Query 60126 TACTACCGAGGATTG 60140
||||| |||||| ||
Sbjct 764806 TACTATCGAGGACTG 764792
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 758940 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 758881
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 758880 TACTATCGAGGA 758869
>seq1581
Length=462264
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 251324 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 251383
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 251384 ATACTATCGAGGAT 251397
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 248749 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 248808
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 248809 ATACTATCGAGGAT 248822
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 249274 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 249333
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 249334 ATACTATCGAGGAT 249347
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 145853 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 145794
Query 60126 TACTACCGAGGATTG 60140
||||| |||||| ||
Sbjct 145793 TACTATCGAGGACTG 145779
>seq2674
Length=1820225
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120
|||| |||| || | |||||| |||||| |||||||||||||||||||| ||||| ||
Sbjct 1577537 ATTTACTCCCCGACGGGGAATTGAACCCCTGTCTCCCGCGTGACAGGCGGGGATACTAAC 1577478
Query 60121 CACTATACTACCGAGGATTGA 60141
|||||||||| ||||||||||
Sbjct 1577477 CACTATACTATCGAGGATTGA 1577457
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1578012 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1578071
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 1578072 TACTATCGAGGAT 1578084
>seq958
Length=630956
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117
|| |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||||
Sbjct 100943 AATATTTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 101002
Query 60118 CACCACTATACTACCGAGGATTG 60140
|||||||||||| |||||| ||
Sbjct 101003 GACCACTATACTATCGAGGACTG 101025
>seq115
Length=1161122
Score = 96.9 bits (106), Expect = 4e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119
|||| ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |
Sbjct 318866 AATTATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGA 318807
Query 60120 CCACTATACTACCGAGGA 60137
||||||||||| ||||||
Sbjct 318806 CCACTATACTATCGAGGA 318789
Score = 93.3 bits (102), Expect = 5e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||
Sbjct 319039 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 319098
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 319099 CTATACTATCGAGGAT 319114
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 318391 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 318450
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 318451 TACTATCGAGGA 318462
>seq880
Length=646355
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||
Sbjct 538528 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 538469
Query 60124 TATACTACCGAGGAT 60138
||||||| |||||||
Sbjct 538468 TATACTATCGAGGAT 538454
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 548967 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 548908
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 548907 TACTATCGAGGAT 548895
>seq425
Length=891692
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 453239 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 453298
Query 60125 ATACTACCGAGGAT 60138
|||||| |||||||
Sbjct 453299 ATACTATCGAGGAT 453312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571793969637680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |