Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2558 100 4e-16 seq2605 91.5 2e-13 seq603 86.0 9e-12 >seq2558 Length=2100711 Score = 100 bits (110), Expect = 4e-16 Identities = 187/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 10353 GATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACT 10412 ||||||||||| || || ||| | | | |||| | || ||| | | || ||| Sbjct 1047006 GATTTAAAAAGCGCTTACGATGTGAATATACCAGCGCGTGGAAAAGCTGTGGTGAAGACT 1047065 Query 10413 GATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTA 10472 ||||| || || | || | |||| ||| | | | | || || | |||| || Sbjct 1047066 GATTTGCAAGTACAAGTACCAGAGGGATCTTACGGACGTGTTGCGCCACGCTCTGGACTA 1047125 Query 10473 GCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAAT 10532 ||| | || || ||||| ||| |||| |||||||| | || ||||| || | || || Sbjct 1047126 GCTGTTAAGAACTTTATAGATGTTGGTGCTGGAGTTGTAGATGAAGACTACCGTGGTAAC 1047185 Query 10533 GTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGA 10592 |||| || |||||||||||||||| |||||||||| | | || |||||||| || Sbjct 1047186 TTGGGCGTTGTATTATTTAATCATTCAGATGAAGATTTCGAAGTGAAACGAGGAGATCGA 1047245 Query 10593 ATATCTCAATTAATATGTGAAAAAATTTTATATCC 10627 || | ||||| || ||||| ||||| ||||| Sbjct 1047246 ATTGCACAATTTATCTGTGAGCGCATTTTCTATCC 1047280 >seq2605 Length=276952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||| | | ||| ||||| || ||||| ||||| |||||||| || | Sbjct 242123 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 242064 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || ||||| ||||| |||||||| | | || ||||| || ||| Sbjct 242063 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGGGGA 242004 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| |||||| ||| || || Sbjct 242003 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 241944 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || ||||| || ||||| || | ||||| | ||| ||||||||| Sbjct 241943 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 241896 >seq603 Length=780983 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| | || |||||||| | || ||||| || |||||| || || || Sbjct 747779 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 747720 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || | ||| || || ||||||||||| | ||| ||||| || ||| Sbjct 747719 AAAGTACGTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 747660 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 747659 ATGCCTTCTTTATCTTG 747643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743495673771520