Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2718 201 1e-46 >seq2718 Length=1670031 Score = 201 bits (222), Expect = 1e-46 Identities = 473/706 (67%), Gaps = 10/706 (1%) Strand=Plus/Minus Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128 ||| ||||||||||| ||||| | ||||| | || ||||| || |||| || || Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429 Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188 || | || || ||||| || | | || || ||||| |||||| ||||| || Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369 Query 16189 TACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247 | ||| || ||| | || || ||| |||| ||||| | ||| || || |||| Sbjct 71368 AA-TACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCAC 71310 Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307 |||| | ||| || || | |||| || || |||||||| | |||||||||| | Sbjct 71309 AATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAAC 71250 Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367 | ||||| |||| ||| || || | ||||| ||| ||||| ||||||||||| | Sbjct 71249 CACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACGG 71190 Query 16368 CGGCAAATGCAACCAATCGCTCACCGTACGTT---CTAtttttactttctatccattttt 16424 | |||||||||| | || ||||| | ||| | | || | ||||| Sbjct 71189 CAGCAAATGCAATTACACGTTCACCAAA-GTTGGCCGACTTCGAAGAA--ATCCAAGCAA 71133 Query 16425 tagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 ||||||| ||| || | || || ||| ||| ||||||| ||||| ||||| || Sbjct 71132 GCGCCCAATCTGCCTTACGCTTTACGGCAGG-CATTGTCTCTATAGCATTGAATAAGCAA 71074 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 || ||| ||| || |||||| ||||| |||| || ||||||||||| ||||| Sbjct 71073 TTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGC 71014 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 | ||||||||| || || ||||| ||||| ||||| | || || | | ||| ||||| Sbjct 71013 ACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCC 70954 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663 | | || | ||| ||| ||||| || || || ||||| || || ||||| || Sbjct 70953 TGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 70894 Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 | | ||| |||||||| | ||| ||||| | || | ||| ||| | |||| Sbjct 70893 AACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATCT 70834 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 || || | ||| || || ||||| ||||| || || || | |||| Sbjct 70833 TTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462492886691600