Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25]
3,306 sequences; 462,505,359 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq2718 201 1e-46
>seq2718
Length=1670031
Score = 201 bits (222), Expect = 1e-46
Identities = 473/706 (67%), Gaps = 10/706 (1%)
Strand=Plus/Minus
Query 16069 ATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAAC 16128
||| ||||||||||| ||||| | ||||| | || ||||| || |||| || ||
Sbjct 71488 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAGATTCAC 71429
Query 16129 AGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCT 16188
|| | || || ||||| || | | || || ||||| |||||| ||||| ||
Sbjct 71428 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 71369
Query 16189 TACTACACTATTTAACGGAGGGTT-TAATAAGTGTTTAAACATTATACAAGCAAAATCAC 16247
| ||| || ||| | || || ||| |||| ||||| | ||| || || ||||
Sbjct 71368 AA-TACGCTCATTACTTGGTTTTTGTATTAAATGTTGGAACATCAAACATGCGAAGTCAC 71310
Query 16248 AATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTC 16307
|||| | ||| || || | |||| || || |||||||| | |||||||||| |
Sbjct 71309 AATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCATTAAAC 71250
Query 16308 CTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTG 16367
| ||||| |||| ||| || || | ||||| ||| ||||| ||||||||||| |
Sbjct 71249 CACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTCAACGG 71190
Query 16368 CGGCAAATGCAACCAATCGCTCACCGTACGTT---CTAtttttactttctatccattttt 16424
| |||||||||| | || ||||| | ||| | | || | |||||
Sbjct 71189 CAGCAAATGCAATTACACGTTCACCAAA-GTTGGCCGACTTCGAAGAA--ATCCAAGCAA 71133
Query 16425 tagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483
||||||| ||| || | || || ||| ||| ||||||| ||||| ||||| ||
Sbjct 71132 GCGCCCAATCTGCCTTACGCTTTACGGCAGG-CATTGTCTCTATAGCATTGAATAAGCAA 71074
Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543
|| ||| ||| || |||||| ||||| |||| || ||||||||||| |||||
Sbjct 71073 TTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAATGC 71014
Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603
| ||||||||| || || ||||| ||||| ||||| | || || | | ||| |||||
Sbjct 71013 ACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACTTCC 70954
Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663
| | || | ||| ||| ||||| || || || ||||| || || ||||| ||
Sbjct 70953 TGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAGGCT 70894
Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723
| | ||| |||||||| | ||| ||||| | || | ||| ||| | ||||
Sbjct 70893 AACACGTGGGAAATAAAATGTCGTTCATTATCAGTGAGGCGTGCCCAATCATCCATATCT 70834
Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769
|| || | ||| || || ||||| ||||| || || || | ||||
Sbjct 70833 TTAGAAAGATCTACTTCCTCTACTGTCCAGAACGATGCTTCTGCCT 70788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462492886691600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |