Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20latifrons_20[refseq_20GCF_5F001853355.1_202016-10-25] 3,306 sequences; 462,505,359 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1558 89.7 4e-13 seq603 82.4 6e-11 >seq1558 Length=2163639 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| || |||||||||||| || |||| | || ||| Sbjct 2034156 ACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCC 2034097 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| ||||||||||| ||||| |||||||| || || || | ||||| || || Sbjct 2034096 AATTGCTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGGATGCCCTCTTTATCTTGG 2034037 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | ||| ||||| | |||||| ||||| Sbjct 2034036 ATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGACCTCTAAGGTAATGGTCTTA 2033977 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || || | || || || || || ||||| |||| Sbjct 2033976 CCAGTTAAGGTTTTGACGAAAATCTGCATTTTGC 2033943 >seq603 Length=780983 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || | || || || || || ||| ||||||||||| || |||||| | Sbjct 746024 CCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTCTGAATATTATAGTCGGAC 745965 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || |||| ||||| || ||||| ||||| || ||||| || || || Sbjct 745964 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGG 745905 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || |||||| || || | | | | | || | ||| ||| Sbjct 745904 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACC 745845 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || || || ||||||| ||| || || || || |||||| Sbjct 745844 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATG 745797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395059281679426